Sample 3300026705

Overview

Basic Information
IMG/M Taxon OID	3300026705 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072074 \| Ga0207593
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A1-12 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	15435654
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
Not Available	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_3_54_17	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F001033	Metagenome / Metatranscriptome	799	Y
F011806	Metagenome / Metatranscriptome	287	Y
F012304	Metagenome	282	N
F022375	Metagenome	214	N
F025757	Metagenome	200	N
F034121	Metagenome / Metatranscriptome	175	N
F051526	Metagenome	144	N
F051557	Metagenome / Metatranscriptome	144	Y

Family

Category

Number of Sequences

3D Structure?

F000268

Metagenome / Metatranscriptome

1411

F001033

Metagenome / Metatranscriptome

799

F011806

Metagenome / Metatranscriptome

287

F012304

Metagenome

282

F022375

Metagenome

214

F025757

Metagenome

200

F034121

Metagenome / Metatranscriptome

175

F051526

Metagenome

144

F051557

Metagenome / Metatranscriptome

144

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207593_100088	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1034	Open in IMG/M
Ga0207593_100229	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
Ga0207593_100396	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	734	Open in IMG/M
Ga0207593_100719	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	634	Open in IMG/M
Ga0207593_100830	Not Available	615	Open in IMG/M
Ga0207593_100938	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_3_54_17	601	Open in IMG/M
Ga0207593_100955	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
Ga0207593_101728	Not Available	517	Open in IMG/M
Ga0207593_101811	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207593_100088

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

1034

Open in IMG/M

Ga0207593_100229

All Organisms → cellular organisms → Bacteria

826

Open in IMG/M

Ga0207593_100396

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

734

Open in IMG/M

Ga0207593_100719

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

634

Open in IMG/M

Ga0207593_100830

Not Available

615

Open in IMG/M

Ga0207593_100938

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_3_54_17

601

Open in IMG/M

Ga0207593_100955

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

598

Open in IMG/M

Ga0207593_101728

Not Available

517

Open in IMG/M

Ga0207593_101811

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

510

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207593_100088	Ga0207593_1000882	F001033	MCGHSLIARLTIAVFVFLMLGVTSVIHAERPLSTAGTSSVGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGNYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207593_100229	Ga0207593_1002291	F000268	MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTHPKTDIETFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYSGFATDGHGGSSGVTFGFDKDGTMIFPDSFDR
Ga0207593_100396	Ga0207593_1003961	F022375	MTGAQPKLWIVISRPDRLPTAIAVAQAVGAQFRGGVHLLREDSKWWDRAHWQPYAGRFDEIHPFPRVNTCRGLRDLPRLYRESAGRREAIAQLPIDKERDLIVCVGGILTISNATISAHSEAKKVLCVAEKVYRDLTRVGERTRYRFTTSGWLQNRLVEPMAGLNRTIHFKPRINPGGDGVRVERLQKNPDSLYHRIVVMSNGGADVSNNPKIIGAKFPSVA
Ga0207593_100719	Ga0207593_1007191	F012304	NEAQINGDEKLVLAQLIVSAAPLFYALLPCSEQKMLTLVAEQIGEPGTELQNTYVLRHGGRVSSILSAVGDNQITTARLGSSMNFIRKLERSERACFMSNLKRFAKELEPIDKPGTYIARLATKPASNTAGAGARLLKWFLLSSGPGLYTCHVHKDNSIAMWLNQKVGFRLISELNEGAFDYRALVLQL
Ga0207593_100830	Ga0207593_1008301	F025757	RPSPCPYLIENHRLCDIFRPHQTEEHPPFKAIESKARLKAWSFATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVHRWTEPAQRRESQPGQKA
Ga0207593_100938	Ga0207593_1009382	F051526	KAPGVTLLTDPAGDSLSPEPGTDMLAASVAQQNGNLVFTINTDPSLANQHPIGSAWYLAMKVPGATAGTFRYTGVRMEFAAAGPSFFSYTPGPNSSGGIDGRFVDAEQPADPSSSYNASTGQIIIVVKPSDLGLGTGSTIVGFVAGSSQTTDPTNSLAGATEVWDSMPDSLTFTNNYTIVGTCP
Ga0207593_100955	Ga0207593_1009551	F011806	MFAARLIVPETGEALVKPEFALVELLFFKSEHEKTDAEAVQDWESEGGTSAHLHEEAFAKALTPLTPNRKSP
Ga0207593_101728	Ga0207593_1017283	F051557	PMQTIYVRDDETHFTGLCDECLTAEAMLYAPKLDPNVAGTLRRHVDVGFRTCPRGHRILVKRVRVMVPA
Ga0207593_101811	Ga0207593_1018111	F034121	MMRVLKPLQDKATTGAGKSLVLPEPRRIRFLIRGEGSVSAGAVTIECCPESTKTGKFWMELATIPVPADSGLAQYYT

Scaffold ID

Protein ID

Family

Sequence

Ga0207593_100088

Ga0207593_1000882

F001033

MCGHSLIARLTIAVFVFLMLGVTSVIHAERPLSTAGTSSVGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGNYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP

Ga0207593_100229

Ga0207593_1002291

F000268

MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTHPKTDIETFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYSGFATDGHGGSSGVTFGFDKDGTMIFPDSFDR

Ga0207593_100396

Ga0207593_1003961

F022375

MTGAQPKLWIVISRPDRLPTAIAVAQAVGAQFRGGVHLLREDSKWWDRAHWQPYAGRFDEIHPFPRVNTCRGLRDLPRLYRESAGRREAIAQLPIDKERDLIVCVGGILTISNATISAHSEAKKVLCVAEKVYRDLTRVGERTRYRFTTSGWLQNRLVEPMAGLNRTIHFKPRINPGGDGVRVERLQKNPDSLYHRIVVMSNGGADVSNNPKIIGAKFPSVA

Ga0207593_100719

Ga0207593_1007191

F012304

NEAQINGDEKLVLAQLIVSAAPLFYALLPCSEQKMLTLVAEQIGEPGTELQNTYVLRHGGRVSSILSAVGDNQITTARLGSSMNFIRKLERSERACFMSNLKRFAKELEPIDKPGTYIARLATKPASNTAGAGARLLKWFLLSSGPGLYTCHVHKDNSIAMWLNQKVGFRLISELNEGAFDYRALVLQL

Ga0207593_100830

Ga0207593_1008301

F025757

RPSPCPYLIENHRLCDIFRPHQTEEHPPFKAIESKARLKAWSFATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVHRWTEPAQRRESQPGQKA

Ga0207593_100938

Ga0207593_1009382

F051526

KAPGVTLLTDPAGDSLSPEPGTDMLAASVAQQNGNLVFTINTDPSLANQHPIGSAWYLAMKVPGATAGTFRYTGVRMEFAAAGPSFFSYTPGPNSSGGIDGRFVDAEQPADPSSSYNASTGQIIIVVKPSDLGLGTGSTIVGFVAGSSQTTDPTNSLAGATEVWDSMPDSLTFTNNYTIVGTCP

Ga0207593_100955

Ga0207593_1009551

F011806

MFAARLIVPETGEALVKPEFALVELLFFKSEHEKTDAEAVQDWESEGGTSAHLHEEAFAKALTPLTPNRKSP

Ga0207593_101728

Ga0207593_1017283

F051557

PMQTIYVRDDETHFTGLCDECLTAEAMLYAPKLDPNVAGTLRRHVDVGFRTCPRGHRILVKRVRVMVPA

Ga0207593_101811

Ga0207593_1018111

F034121

MMRVLKPLQDKATTGAGKSLVLPEPRRIRFLIRGEGSVSAGAVTIECCPESTKTGKFWMELATIPVPADSGLAQYYT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026705: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A1-12 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences