3300026695: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN391 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026695
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054709 | Ga0208840
• Sample Name: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN391 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13452259
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_54_36	1
Not Available	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Willamette National Forest, Oregon, USA
• Coordinates
  • Lat. (^o): 44.20517707
  • Long. (^o): -122.1284473
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001356	Metagenome / Metatranscriptome	716	Y
F001528	Metagenome / Metatranscriptome	677	Y
F002784	Metagenome / Metatranscriptome	530	Y
F005221	Metagenome / Metatranscriptome	408	Y
F028924	Metagenome / Metatranscriptome	190	Y
F032614	Metagenome / Metatranscriptome	179	Y
F050785	Metagenome / Metatranscriptome	145	Y
F064058	Metagenome / Metatranscriptome	129	N
F068071	Metagenome / Metatranscriptome	125	Y
F069113	Metagenome / Metatranscriptome	124	Y
F073638	Metagenome / Metatranscriptome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208840_100416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	820
Ga0208840_100511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_54_36	765
Ga0208840_100634	Not Available	713
Ga0208840_100684	Not Available	699
Ga0208840_101259	Not Available	589
Ga0208840_101311	All Organisms → cellular organisms → Bacteria	584
Ga0208840_101481	Not Available	564
Ga0208840_101842	Not Available	530
Ga0208840_102104	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510
Ga0208840_102199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	504
Ga0208840_102256	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208840_100416	Ga0208840_1004161	F073638	MQRQLKAPVLQISETRGNPVETFNKQTTPIGRVVEVHLPFGSITWHRPVAVEVRQEDTIYRLPIYDSTSRVISAIVLTGLATVLVPFV
Ga0208840_100511	Ga0208840_1005112	F032614	SATRPIIVAWRVLSGAASEKGKEAQVTRELLEQVLAGAGPNAISLLLADALYADGPLLAWLKYEKGIDALVRLPEDRLLYQDVQGLADAHLIEWTHHRYVRTVQGHKHMREVEVTAAAELTSWDSFLEAAASYGVTDATLWACLIHDVTTQETAQEPPMGLVSTRRWRDGFTARPRLPPPLAH
Ga0208840_100634	Ga0208840_1006341	F002784	MNEFTDKNEQAFLDACGAIGVEPNATVNKQKERYLVSEFLKHPVSWLETEILYHSYTTRGEAQEVANGIDRMISECAPVGRSKLFPRPKHSSAL
Ga0208840_100684	Ga0208840_1006842	F064058	MHDVERHEDAVTEDAKEIRGLKVDVWELSNLVRLLAAFVPRPVSGMVEEKAAIEFETQLQAVLQKHGIER
Ga0208840_101259	Ga0208840_1012591	F050785	VRRSQICNTLIVSILACCQKLPATVPDLANRPRQLVFLTPVDSQLSDFLNEVHQIARLEPSIVERIDEDLDLHAKKKKLLRLVDAQFLAGQTPDLPKLQLQLRELKVDNIDLEIGRPRTEAYIVYLFLMLRGFIGGCKDQHARLMLEESITLRLWL
Ga0208840_101311	Ga0208840_1013112	F069113	MMVVVVPEIEQFIFQIDSRPEQRVIQTFASNGADEPFHEGMRQGNVGDSLDFCHLQDPQIGLP
Ga0208840_101481	Ga0208840_1014811	F001356	MAKDPKTEEKSADLKYRQVSIDSLDKGRRGKHYDLTRGILQQLKTLSPGTAMEIPLAGGIGLANLRSAVHRSSTSHGLEIETRADEKNFYVWRKVEKEA
Ga0208840_101842	Ga0208840_1018421	F001528	IVVVLIVALVLGAFVDRITALKIIAGVVLLWTLQNQPAVFECIRKLFSFVQRRPSVREYRGGVTTVRAS
Ga0208840_102104	Ga0208840_1021041	F068071	PLMLAQQKPGEKSKHIPKTIWNFDGGVFLETDGSLSENTCFRLAGHMMEKGFFDNLKRIDDNQGTRYVRGKETVTEFPEHLKLLFIIHDQPCPSQVPNSQGREYLTREMMSKLRLSLFWKRGVDLRPAENFKVKFFSVEPIPPYATELAKELPKRLQWAYELDIPSAGI
Ga0208840_102199	Ga0208840_1021991	F028924	RLFTARKCEVGADAGKWYTVVIERQGMRRTGYCALTCPGHDSSEDALAHHLQYQLDRETDLWLERRVAPRDCEICGEPTTLRARLGRDTKLFVLCRQHQSTNSLQKLFLRRLAAQPASGV
Ga0208840_102256	Ga0208840_1022561	F005221	RRNPQPLPVIVFLHGDYTGQPRRELSELVNDFLETSGIAYGIKNNKSPGYLGLFVEQGEILGHMAKHTGGQYFSVPSAGYATALETILVQLHFRYELGFIPPTIDGKRHELKVELTKAAKKEHKGVRLRFRSEYIPIREAPEWAN