3300026681: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1096 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026681
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0055337 | Ga0208583
• Sample Name: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1096 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9149151
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Nunn, Colorado, USA
• Coordinates
  • Lat. (^o): 40.81667
  • Long. (^o): -104.76667
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012785	Metagenome / Metatranscriptome	277	Y
F041792	Metagenome / Metatranscriptome	159	Y
F044992	Metagenome	153	Y
F061632	Metagenome	131	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208583_100049	All Organisms → Viruses → Predicted Viral	1487
Ga0208583_100064	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1413
Ga0208583_101148	All Organisms → cellular organisms → Bacteria → Acidobacteria	676
Ga0208583_102959	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208583_100049	Ga0208583_1000491	F041792	LALLRRHFFEYERYRAVRSKEMMEARVDAVFSSLREDPAFVALTRDADGKLPLPASPAGARTGMNR
Ga0208583_100064	Ga0208583_1000643	F044992	MKREVGSYDEDNAEAARFEGDDVGLPESPIYSNFSKNLWRTHARHGLVQSPNRSRENTDGHRPIRDDE
Ga0208583_101148	Ga0208583_1011482	F061632	MISLSMFREATSKLSLRKKLTILVSVGVFLPLLVLTYMQYQSLTELQNKTKGAFKDNLRQGFTILQRQMKRRLEDVAAQT
Ga0208583_102959	Ga0208583_1029591	F012785	MVTHYQPERLRRNSDQPTAITNVLVATSESSSRTGEIPLGTPTCSARTRRGRWALYPSGQEVVVVWPGGALTGPPAEVVGEL