3300026675: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN344 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026675
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0055416 | Ga0208068
• Sample Name: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN344 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8508674
• Sequencing Scaffolds: 20
• Novel Protein Genes: 21
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → grassland soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Chapel Hill, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.913
  • Long. (^o): -79.056
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003255	Metagenome / Metatranscriptome	497	Y
F004313	Metagenome / Metatranscriptome	444	Y
F005494	Metagenome / Metatranscriptome	399	Y
F011788	Metagenome / Metatranscriptome	287	Y
F012407	Metagenome / Metatranscriptome	281	Y
F014056	Metagenome / Metatranscriptome	266	Y
F015807	Metagenome / Metatranscriptome	252	Y
F018011	Metagenome / Metatranscriptome	237	Y
F018023	Metagenome / Metatranscriptome	237	Y
F025553	Metagenome / Metatranscriptome	201	Y
F026747	Metagenome / Metatranscriptome	197	Y
F044641	Metagenome / Metatranscriptome	154	Y
F046591	Metagenome / Metatranscriptome	151	Y
F049049	Metagenome / Metatranscriptome	147	Y
F054675	Metagenome / Metatranscriptome	139	Y
F079129	Metagenome	116	Y
F087684	Metagenome / Metatranscriptome	110	Y
F089285	Metagenome / Metatranscriptome	109	N
F095896	Metagenome / Metatranscriptome	105	Y
F099587	Metagenome / Metatranscriptome	103	Y
F103337	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208068_100030	All Organisms → cellular organisms → Bacteria → Acidobacteria	2169
Ga0208068_100083	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium	1551
Ga0208068_100160	Not Available	1225
Ga0208068_100165	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1202
Ga0208068_100292	All Organisms → cellular organisms → Bacteria	926
Ga0208068_100349	All Organisms → cellular organisms → Bacteria → Proteobacteria	850
Ga0208068_100359	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	840
Ga0208068_100590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693
Ga0208068_100652	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674
Ga0208068_100679	Not Available	662
Ga0208068_100717	Not Available	653
Ga0208068_100959	Not Available	598
Ga0208068_101037	Not Available	585
Ga0208068_101139	Not Available	572
Ga0208068_101161	All Organisms → cellular organisms → Bacteria	566
Ga0208068_101296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	549
Ga0208068_101350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542
Ga0208068_101376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539
Ga0208068_101482	All Organisms → cellular organisms → Bacteria	528
Ga0208068_101768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208068_100030	Ga0208068_1000302	F025553	MKPVSWDKQLGLASPLETAASQSGKIKSPSNKEAGLDVSHHALVSREGRGENFFLDILFYRMSVIGMFHQLSHGGFCEGLVPVL
Ga0208068_100083	Ga0208068_1000834	F103337	MSGKVVVYKNRTNVITVSLGIDVSADTITSEIRSEADVNSPLIATWVVSYKTDGKDGELILTLDDLYTSQIRANSGYMDLKRISGSEPLAVFDQPLEVAFRGAVTQ
Ga0208068_100160	Ga0208068_1001601	F018023	VQRYWCPQCELTISVLPADRLPYRPLEGVRVQSYFDARAGIGSGPDPPPAELEAGGLRRAWTRFQTRVSILKEAFGLLITSVISSPEHLWKQMRLAKETLAVILGFLAQTRNLSLLGDYRCLHLPEAAP
Ga0208068_100165	Ga0208068_1001651	F026747	LQAVTRVKLEQASKAAMWTPTRRMIGEGRADWEEPGAGARQAITISTSRATGVVSTACKEGDLRQWGRSGMLGESRAPNAVYGRAEHLDVGEGQRYRRSRVMPVEGRTLASGVLEKKGRRGDWR
Ga0208068_100292	Ga0208068_1002921	F014056	MSYFVQRQPQRRAPRARVRGTIAAVIRLENGRQLAAKLQQLSITGGLLDLSSYLEERTWVEVTIFLSSGPVRATAEMMFPMLGAVSYLQPFRFTNLGADELHALDQEVSAL
Ga0208068_100349	Ga0208068_1003492	F099587	MRVCRHERGEIGKRRMGERKPHFVGKVALAGRDGLRIPVEREQAAFPTQGLENECGMAATPKRRIDIVTARFQGEPGERLGGEHWNVLNHLRSGAPPPP
Ga0208068_100359	Ga0208068_1003592	F012407	MPLAPPITDIEQLKNHPAVARLLGWKDSAIQSVKFDRDEMTIFVDRSDIRDACALLKNDPECPF
Ga0208068_100590	Ga0208068_1005901	F095896	MSTDPGLPRRPNHSAGNFDREESQLWRWILGFMLLLAVALTVLLWERLETIPYQLRAIPIGV
Ga0208068_100652	Ga0208068_1006521	F044641	MSRWNINAPTLLILSIVVCFMLVIVVLPEVDLPDTAFQQGTAPLVVHARATVAPAVVAVAALFHFPQVVQFWHPERELELVASALDPNF
Ga0208068_100679	Ga0208068_1006791	F079129	MLAAPALHAASFASAHYDSKTNELVVTLNYGGSNPDHQFSIQWGQCQPLGDDGTQHQIAAQVLDSQWNDDEHQTFTKTVRFSLAGLNCRPATVTLRTAPRFEYTLHIP
Ga0208068_100717	Ga0208068_1007172	F089285	HPLYRQTATVLRVEHTKGESHLRVITETGEERLIPRWMFDPGAFQPTSVEQPLIGLDALRHLLRVVFSSPLHLSRRDQKGRRDDPIAPVSATSEPQRAASQQGVQRSERPCRQPADCSDGGEQKETAAAGDRQP
Ga0208068_100839	Ga0208068_1008391	F054675	MCGTRVVRSLAVSLVAGVLCFSYSGPILAQAGAAPADEDAKMRVLQQRIDDLSKQLKQIQDEQAKTAKTVTTVDKAWNTFIKGFFGTLDVSIDYTTKGMEDMVAYHLACTGPNGGPP
Ga0208068_100959	Ga0208068_1009592	F049049	FENFRPGEEQGTQRLRWIAAVVSAALDSRTMARGKKPPSWSPVAIERDGRAYSGKFYVDGRLITVLYNGRTKTTQLGGSDATAIASRLLSELLPEK
Ga0208068_101037	Ga0208068_1010371	F046591	VNQLAFAIGALAGLVCAAVAVALLRRLRRRPASPYDAQHLAVFEQWPTTAIALDPATMRWVSGNPASLRNLGLTLEELRARKFDDLFRAEGAEGRALLQKLQDATTRAPLEVHQRCAD
Ga0208068_101139	Ga0208068_1011391	F003255	MPVVLVVHRLKNFDEWLKVFKADPPPKIGRWRLLRGSDDRDRVHVVGEMAASEVKAVKDWIKSQHMQDVFKRVNAM
Ga0208068_101161	Ga0208068_1011612	F087684	GAVELVGHDLQNQSFEHAASRSDGYWVRHFMLDNPTGADCIYCRLFPAHKHEH
Ga0208068_101296	Ga0208068_1012961	F015807	GMERLVRHDGESRDTDRLTWSRHRRIFGGQGVRREAGSERLEENHRVVINGSNPDR
Ga0208068_101350	Ga0208068_1013502	F018011	GSQKRRGGLMHQSTWVVLLLLMFGEIAVLALGGFILWLAGEFGDAPKWTRLRNLRKRSRA
Ga0208068_101376	Ga0208068_1013761	F005494	RKSWREATIISRLDPNHWRAEYPGGGSGMFRGADIRACDPERDATPAEQPRRAKATAPQKSSRSRYAIDPETITAGRLPQRAPVVTSAANPHYQKHFDQLFDLAKAGDWDGVRNYEVKGSNSYSKMVARYRQDLLAVHAASEAAAQ
Ga0208068_101482	Ga0208068_1014821	F004313	MIKALTLSMCLTASSLSLSAGAQDVRRYSDGPVTNVTYIHVDYGNLEKYVD
Ga0208068_101768	Ga0208068_1017682	F011788	VFLQTEFKRLAQEAGVKGARIHVERAIAADYEQVLREVSACLQSAKKRAA