3300026662: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-B (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026662
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072132 | Ga0207533
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-B (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6536758
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus → Desulfosporosinus metallidurans	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.42
  • Long. (^o): -89.4
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001677	Metagenome / Metatranscriptome	654	Y
F003284	Metagenome	496	Y
F015608	Metagenome	253	Y
F015807	Metagenome / Metatranscriptome	252	Y
F054479	Metagenome / Metatranscriptome	139	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207533_100004	Not Available	2827
Ga0207533_100086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus → Desulfosporosinus metallidurans	882
Ga0207533_100143	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	773
Ga0207533_100169	All Organisms → cellular organisms → Bacteria → Acidobacteria	747
Ga0207533_100712	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	549

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207533_100004	Ga0207533_1000045	F054479	MHMRHDMESCDQGGEDRDKTWLDGPVASVKGKLSDDLAPMDRGNGEEQVRSRSMYQ
Ga0207533_100086	Ga0207533_1000862	F015807	MPHRPEWMEGMERLVRHDGESRDTDRPTWSHHRRRSGGQGARREAGSERLEENHRVVINGSDPER
Ga0207533_100143	Ga0207533_1001432	F015608	IESKVEITNTLNVEKDQPQLSLVELQAAEGSFRQPTPAELSILTFWKLRYARSRAQELSNEFARLLNRGSPLE
Ga0207533_100169	Ga0207533_1001691	F003284	FWRKVTCEAFEPRTKLEEIEDARGLIIKGFTRITTVDVRGVRIDAIEMRDLRSANGIALSKGLVVSLREGGERPNEDRAFVDYDEIEYLLNAIDVISRVDETATKLPGFEARYRTRGDLELSVFRQTRSGTAVQMRTGICDYATVSMSLDDLAKIKAMIQEAKTRLDDIR
Ga0207533_100712	Ga0207533_1007121	F001677	TGPVSDAIFEGKDAATITAGLNPLAKSTLAKGEREVRIWYSSFGNPQYLVIIRQNGAATTGRMLLWWDQYYETTPTSADTRVDNFVRRNFDCGAISKRDSHFGEDRWISSVCEANLKGTPDWKAFLSEVEAHALPQTTATTDSVDQGEDQNWGITVERRSGVNYGVSYYHTALTFGAPEPGR