Sample 3300026661

Overview

Basic Information
IMG/M Taxon OID	3300026661 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072136 \| Ga0207481
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-B (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	7049434
Sequencing Scaffolds	16
Novel Protein Genes	17
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.42	Long. (^o)	-89.33	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F001033	Metagenome / Metatranscriptome	799	Y
F001757	Metagenome / Metatranscriptome	641	N
F002603	Metagenome / Metatranscriptome	544	Y
F005987	Metagenome / Metatranscriptome	384	Y
F010356	Metagenome / Metatranscriptome	305	Y
F014456	Metagenome / Metatranscriptome	263	Y
F034758	Metagenome / Metatranscriptome	174	Y
F053284	Metagenome / Metatranscriptome	141	N
F056978	Metagenome / Metatranscriptome	137	N
F057231	Metagenome / Metatranscriptome	136	N
F059436	Metagenome / Metatranscriptome	134	N
F065151	Metagenome	128	Y
F069156	Metagenome	124	Y
F092576	Metagenome / Metatranscriptome	107	N
F100589	Metagenome / Metatranscriptome	102	N
F105963	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F000268

Metagenome / Metatranscriptome

1411

F001033

Metagenome / Metatranscriptome

799

F001757

Metagenome / Metatranscriptome

641

F002603

Metagenome / Metatranscriptome

544

F005987

Metagenome / Metatranscriptome

384

F010356

Metagenome / Metatranscriptome

305

F014456

Metagenome / Metatranscriptome

263

F034758

Metagenome / Metatranscriptome

174

F053284

Metagenome / Metatranscriptome

141

F056978

Metagenome / Metatranscriptome

137

F057231

Metagenome / Metatranscriptome

136

F059436

Metagenome / Metatranscriptome

134

F065151

Metagenome

128

F069156

Metagenome

124

F092576

Metagenome / Metatranscriptome

107

F100589

Metagenome / Metatranscriptome

102

F105963

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207481_100008	Not Available	2384	Open in IMG/M
Ga0207481_100036	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1494	Open in IMG/M
Ga0207481_100109	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1112	Open in IMG/M
Ga0207481_100126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1087	Open in IMG/M
Ga0207481_100129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1073	Open in IMG/M
Ga0207481_100135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1067	Open in IMG/M
Ga0207481_100164	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1014	Open in IMG/M
Ga0207481_100280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	892	Open in IMG/M
Ga0207481_100325	Not Available	858	Open in IMG/M
Ga0207481_100334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	853	Open in IMG/M
Ga0207481_100703	All Organisms → cellular organisms → Archaea	701	Open in IMG/M
Ga0207481_100821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	671	Open in IMG/M
Ga0207481_100999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
Ga0207481_101274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
Ga0207481_101594	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
Ga0207481_101632	Not Available	549	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207481_100008

Not Available

2384

Open in IMG/M

Ga0207481_100036

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

1494

Open in IMG/M

Ga0207481_100109

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

1112

Open in IMG/M

Ga0207481_100126

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium

1087

Open in IMG/M

Ga0207481_100129

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

1073

Open in IMG/M

Ga0207481_100135

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

1067

Open in IMG/M

Ga0207481_100164

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

1014

Open in IMG/M

Ga0207481_100280

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

892

Open in IMG/M

Ga0207481_100325

Not Available

858

Open in IMG/M

Ga0207481_100334

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

853

Open in IMG/M

Ga0207481_100703

All Organisms → cellular organisms → Archaea

701

Open in IMG/M

Ga0207481_100821

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

671

Open in IMG/M

Ga0207481_100999

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

633

Open in IMG/M

Ga0207481_101274

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

592

Open in IMG/M

Ga0207481_101594

All Organisms → cellular organisms → Bacteria

554

Open in IMG/M

Ga0207481_101632

Not Available

549

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207481_100008	Ga0207481_1000084	F014456	MAKRAYIADVAGGTATVTIQVQGTQTFKNWAISWVNAAAGKIELSLSSTSQIGTAQPDTNVIARVSASAGANTAAAVIPINVPVKAFQSIYVHCTGAGNLGTSVLY
Ga0207481_100036	Ga0207481_1000362	F001033	EDGSSFRADLEQSTPNERRFMNFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIARLTIAVFVFQMLGVTSVVHAEGPDSTAGTSSAGTRKLFIGPSSAFVALGKASLIVSPLTHRDGNYEGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSGDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207481_100109	Ga0207481_1001091	F002603	MTAITVRIPDESVELDNVEERRVLTALEVIYEGGCLHGKTADFPTRDLERVVVGLHLRNWHFFETYERTICVDIRSRRTIFRYAGRTAKRNKSSWWERLLAELRIHKLKAIEI
Ga0207481_100126	Ga0207481_1001262	F056978	MRRTLKRTKSKKQQGRVRDLKPVKEVKGSGKIEHAVEHHETAVTEDAKELKKLREEVTQIKSDIANILEALQTLEAWVPMSRAEIPQYAWAYRKFVDISTRLRQEARSR
Ga0207481_100129	Ga0207481_1001291	F053284	LEAWEGRRLQLDGQEFLRFRGLWQREDVPALVEEWGCLGIDRAAARSEARSKQGWTQLLVDHPARPGAMYSELFADWIRLSGLMDYAVGLLGLLQDHAAVGDLVDALRGPLGSRPRDPEQIRADLPDEGWLRGILGGAARMNMSCEFEADTNSMTLVSRDPSMADGNLGFTATLDVRLAPEGIAETLAGLVNDWLPPMHPYLGSESGAFRLGYRPPSDLLSTLWMQFANVLSADRPLKVCSFGACPGPPARPHLFLWRYGSGATIARNGTSKYCHPLCTSAASASRRSRCSTSGR
Ga0207481_100135	Ga0207481_1001352	F034758	MWYRDENGQQWAEIIDFLTMHPEARRKVVRLLGEIEAVERR
Ga0207481_100164	Ga0207481_1001641	F001757	MRILKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGIAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV
Ga0207481_100280	Ga0207481_1002801	F057231	MIRATGAVPIHQVVLSSLCDLQARLRGDPATLVLARGPAHIDDGTAPARITAPSFSDDAAIAAERRIAQFQARLAELHQERTSVVDLQQTIDRRLRDA
Ga0207481_100325	Ga0207481_1003251	F059436	MNRSAEDGEWSSPHSGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEAVPGVGSGRGTQERGQSKRPRIAAGRAATPVGSKRSTGGGRPRAVWQRRRATRG
Ga0207481_100334	Ga0207481_1003341	F092576	LKRLFLLCIGVLIVFAAPAKADPGPSDEVVVIAGSCDDGTTIVSAHNTQDKSLGYLIRIDGRLVEQGRLEPGERVQRTYEVPLGESHFYRIRLGLPV
Ga0207481_100703	Ga0207481_1007032	F100589	VFVPFLMWRLGEISPVEANKYLVKRKHDECRISYDHNNVEYVIWMMALMFMSWSMTNLKRKTQNGHCQNIDHPHGNMNPRRCQEGTKFHQELYNEYVKTLKDLLIHSESEKDH
Ga0207481_100821	Ga0207481_1008211	F005987	MGKVLTLPERQDALGGWHQVLREVCYGCGCHYVSAEDDHDLVWEPGREVQRGCTDELCECHTAPVI
Ga0207481_100991	Ga0207481_1009911	F069156	MRSRRSFGSKALLILAFGCAISTSNAGQASYPPGRVVVKRVPQFGWNLAFNLQIDGRRVATIPKGRHYDDWLPAGRHVLTVYTASYVGLPQAT
Ga0207481_100999	Ga0207481_1009992	F105963	MSTWLIVWIALGAVTTLVVLAFVLALGRHALILGRTARRFQEEVGSAADEVARERARASEHTDRLRRAQRAGRS
Ga0207481_101274	Ga0207481_1012741	F065151	NRMSVNFGGATSGTGEDAADGDDGLVVGEPGNFAVSGIGEVEGGVPASVADGAWARALP
Ga0207481_101594	Ga0207481_1015941	F000268	MLMRVVTVMLLLSAGIAAEAMSHSFVCKASGRLGGPIRFEFFRNSTTRPKTDITSFTVSIRTADDRWKAMWAILSGRGLTRPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGKMTFPDSFESISGE
Ga0207481_101632	Ga0207481_1016322	F010356	MEQPRRLSEEVRQSLTLIGMTALTLLASIAFGLFVGHVG

Scaffold ID

Protein ID

Family

Sequence

Ga0207481_100008

Ga0207481_1000084

F014456

MAKRAYIADVAGGTATVTIQVQGTQTFKNWAISWVNAAAGKIELSLSSTSQIGTAQPDTNVIARVSASAGANTAAAVIPINVPVKAFQSIYVHCTGAGNLGTSVLY

Ga0207481_100036

Ga0207481_1000362

F001033

EDGSSFRADLEQSTPNERRFMNFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIARLTIAVFVFQMLGVTSVVHAEGPDSTAGTSSAGTRKLFIGPSSAFVALGKASLIVSPLTHRDGNYEGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSGDRGSVTFSIVTDDARIVFNTSYHFPAPRP

Ga0207481_100109

Ga0207481_1001091

F002603

MTAITVRIPDESVELDNVEERRVLTALEVIYEGGCLHGKTADFPTRDLERVVVGLHLRNWHFFETYERTICVDIRSRRTIFRYAGRTAKRNKSSWWERLLAELRIHKLKAIEI

Ga0207481_100126

Ga0207481_1001262

F056978

MRRTLKRTKSKKQQGRVRDLKPVKEVKGSGKIEHAVEHHETAVTEDAKELKKLREEVTQIKSDIANILEALQTLEAWVPMSRAEIPQYAWAYRKFVDISTRLRQEARSR

Ga0207481_100129

Ga0207481_1001291

F053284

LEAWEGRRLQLDGQEFLRFRGLWQREDVPALVEEWGCLGIDRAAARSEARSKQGWTQLLVDHPARPGAMYSELFADWIRLSGLMDYAVGLLGLLQDHAAVGDLVDALRGPLGSRPRDPEQIRADLPDEGWLRGILGGAARMNMSCEFEADTNSMTLVSRDPSMADGNLGFTATLDVRLAPEGIAETLAGLVNDWLPPMHPYLGSESGAFRLGYRPPSDLLSTLWMQFANVLSADRPLKVCSFGACPGPPARPHLFLWRYGSGATIARNGTSKYCHPLCTSAASASRRSRCSTSGR

Ga0207481_100135

Ga0207481_1001352

F034758

MWYRDENGQQWAEIIDFLTMHPEARRKVVRLLGEIEAVERR

Ga0207481_100164

Ga0207481_1001641

F001757

MRILKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGIAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV

Ga0207481_100280

Ga0207481_1002801

F057231

MIRATGAVPIHQVVLSSLCDLQARLRGDPATLVLARGPAHIDDGTAPARITAPSFSDDAAIAAERRIAQFQARLAELHQERTSVVDLQQTIDRRLRDA

Ga0207481_100325

Ga0207481_1003251

F059436

MNRSAEDGEWSSPHSGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEAVPGVGSGRGTQERGQSKRPRIAAGRAATPVGSKRSTGGGRPRAVWQRRRATRG

Ga0207481_100334

Ga0207481_1003341

F092576

LKRLFLLCIGVLIVFAAPAKADPGPSDEVVVIAGSCDDGTTIVSAHNTQDKSLGYLIRIDGRLVEQGRLEPGERVQRTYEVPLGESHFYRIRLGLPV

Ga0207481_100703

Ga0207481_1007032

F100589

VFVPFLMWRLGEISPVEANKYLVKRKHDECRISYDHNNVEYVIWMMALMFMSWSMTNLKRKTQNGHCQNIDHPHGNMNPRRCQEGTKFHQELYNEYVKTLKDLLIHSESEKDH

Ga0207481_100821

Ga0207481_1008211

F005987

MGKVLTLPERQDALGGWHQVLREVCYGCGCHYVSAEDDHDLVWEPGREVQRGCTDELCECHTAPVI

Ga0207481_100991

Ga0207481_1009911

F069156

MRSRRSFGSKALLILAFGCAISTSNAGQASYPPGRVVVKRVPQFGWNLAFNLQIDGRRVATIPKGRHYDDWLPAGRHVLTVYTASYVGLPQAT

Ga0207481_100999

Ga0207481_1009992

F105963

MSTWLIVWIALGAVTTLVVLAFVLALGRHALILGRTARRFQEEVGSAADEVARERARASEHTDRLRRAQRAGRS

Ga0207481_101274

Ga0207481_1012741

F065151

NRMSVNFGGATSGTGEDAADGDDGLVVGEPGNFAVSGIGEVEGGVPASVADGAWARALP

Ga0207481_101594

Ga0207481_1015941

F000268

MLMRVVTVMLLLSAGIAAEAMSHSFVCKASGRLGGPIRFEFFRNSTTRPKTDITSFTVSIRTADDRWKAMWAILSGRGLTRPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGKMTFPDSFESISGE

Ga0207481_101632

Ga0207481_1016322

F010356

MEQPRRLSEEVRQSLTLIGMTALTLLASIAFGLFVGHVG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026661: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-B (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences