3300026650: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1120 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026650
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0055111 | Ga0208217
• Sample Name: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1120 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3848355
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
Not Available	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Nunn, Colorado, USA
• Coordinates
  • Lat. (^o): 40.81667
  • Long. (^o): -104.76667
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007604	Metagenome	348	Y
F010054	Metagenome / Metatranscriptome	309	Y
F011886	Metagenome / Metatranscriptome	286	Y
F013868	Metagenome / Metatranscriptome	267	Y
F018075	Metagenome / Metatranscriptome	237	N
F024739	Metagenome / Metatranscriptome	204	N
F049469	Metagenome / Metatranscriptome	146	N
F095253	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208217_100095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1101
Ga0208217_100301	Not Available	767
Ga0208217_100571	All Organisms → cellular organisms → Bacteria	617
Ga0208217_100587	Not Available	610
Ga0208217_100814	Not Available	550
Ga0208217_100845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	544
Ga0208217_100974	Not Available	513
Ga0208217_100986	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208217_100095	Ga0208217_1000952	F095253	EAGALRAALAACVVALLRAGTEAHLPHAETVAQRLVELC
Ga0208217_100301	Ga0208217_1003012	F024739	PAGSFSAMWEYAIREYVQEWGEPTEDRSMGSFLEELNRLGEDGWEAVGITPRTHYDRGGGPGGWDSFTFVVLLKRLRPADDMMPRS
Ga0208217_100571	Ga0208217_1005712	F007604	MMPTDPTRRSALSVALLAHADTRYEVDCWMAGNGQPNGSVRYDTDRAWFTIQGRPAAMRELADALVRCAELTE
Ga0208217_100587	Ga0208217_1005871	F010054	MLIYGFVLWGLSLLGIRLPIELPRWLFLVLEAVVIWFLWKGVRAARRAPSNHVRLFSAQENWANAFTLQALILFLW
Ga0208217_100814	Ga0208217_1008141	F018075	MSSKGRAVQGARTQSSSGKTGQKSFPLGRVCRQCGDPLSQYNPGPNCWNHTVEFPWRGPTARPKP
Ga0208217_100845	Ga0208217_1008451	F049469	QLERVEAARRRFEQGVREVVQRLSGEFARVCQTAGAEGELRLLAGDRPEEYGVDVLVAHRAGERRRSYRDAAHSGGQRATIAILLLLATMGTAEAADLLIMDEHIAHLDSTNIDHVAALMHALADRVQFVLATPTNAESLRLSWCDLQLAFLPRDPGRAYSPPIRLLSRLGVGDLEARAP
Ga0208217_100974	Ga0208217_1009741	F013868	MNGLSASELADLAGVTEAEVQRLADLGVLVARDGADPFLASDVQKVRLATACEQAGLPMEAIAAAVQQGRLSFAFLEAAPYRRWAVRS
Ga0208217_100986	Ga0208217_1009861	F011886	PGLPARSRHRGVPLALAAGPLYGSGMELEVGPFDPALHIRSRDHYEAVRREAQLLSLGPEAAPARFEELIDRLSRQFPPSPVDEVADRAYLAREPSFAVRRDLPDELVPAALAACDELEELLDEFDRWANAEGVQLLEAPEDIKQYRKAYLDQVRAQLQKANG