3300026649: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-C (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026649
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072130 | Ga0207574
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-C (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4182133
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.43
  • Long. (^o): -89.41
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022723	Metagenome / Metatranscriptome	213	Y
F038571	Metagenome	165	Y
F072004	Metagenome / Metatranscriptome	121	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207574_100023	Not Available	1206
Ga0207574_100050	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	951

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207574_100023	Ga0207574_1000232	F072004	VLPACDPAPAHNTLHDVPRGPLLKGGLTLFFALTTSCASPKASPQLSLCARWAVFAAWTIRCWSLGLSRRYLTRTFSWMLGPLPRLSQWCIYPFLPTELRPSHNGYVVGSDAKIHTTTSVRTVISGLQSFLNVQASKFACHPGRSYRWRFRVQGSCDFYFRAPCVSLPSRTSDMLAVRIGQLTAGDLHPIRFATLSAASNRLNGFWIPLPFVSPG
Ga0207574_100050	Ga0207574_1000503	F022723	PTATAVSDSGDNKSAPRVAETSPDANELWQNVLAKVPAQKAFVRNSAAAAHVLGIEGRNFQLGFAPADKAMMDILGTQANRRFLETLLHEITGTDWSVKLSVKEELPSKPELPSEDSRSEKFKEDPLIQEAIGLFNAQIKS
Ga0207574_100267	Ga0207574_1002672	F038571	MLKIKIFPITFEIVTDECAENKVLPITFEIVTDECAENNVLPITSKIVTDKYANNKNLADYF