3300026648: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-A (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026648
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072135 | Ga0207557
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-A (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3665762
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella → unclassified Nordella → Nordella sp. HKS 07	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.42
  • Long. (^o): -89.33
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001823	Metagenome / Metatranscriptome	630	Y
F010550	Metagenome / Metatranscriptome	302	N
F075071	Metagenome / Metatranscriptome	119	Y
F095664	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207557_100060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella → unclassified Nordella → Nordella sp. HKS 07	948
Ga0207557_100226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	641
Ga0207557_100420	Not Available	532

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207557_100016	Ga0207557_1000163	F095664	MPFDRRHVLAQWGGTLPGGEIWSNSLRLASTDTGPDADVPDHDAMVEWLTTYAKDAVAAWHGSFDLKCSNQAKLAYLKMNVVDIAGRYIEQNTLEYLYSPVVPGGSASNIHPTQIALAVSLTTEFSRGHAHRGRFYVPMPVHVVDATTGLISVSDAIQVATAAKTFIEALADEPGPDILPGMRVCV
Ga0207557_100060	Ga0207557_1000601	F001823	MRAIDRDLIRAGHYGQRPGVPHSKAEHMAAPTKAANVKKVLANSEPSTHGTKRTFLFAP
Ga0207557_100226	Ga0207557_1002262	F075071	MPSVPDDTLHEVTEIAVIVHRDRGVLLVHSDDRRWHFPDSTLRVGQRWDESLRQAVRSATGIEDLTIGRVLLIQNFGPGEVDVLPQFGLFFLCATQTPDAVGTTPHRWITDPSELKGMELFHPLVADLIGHAQREELP
Ga0207557_100420	Ga0207557_1004202	F010550	VGDRPRRHDEIKGATVLLTGWSQGREREVADALGTISTEPVDLDDVKLPFVALPKATLEKAEAARDLLVEAGGSVDLQDAWVTRDAPRPVAARPTCPFCGSTKTQPYTHAG