3300026644: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1118 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026644
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0055316 | Ga0208352
• Sample Name: Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1118 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3312861
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. A3M-1-15	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Nunn, Colorado, USA
• Coordinates
  • Lat. (^o): 40.81667
  • Long. (^o): -104.76667
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001472	Metagenome / Metatranscriptome	688	Y
F013569	Metagenome / Metatranscriptome	270	Y
F018073	Metagenome / Metatranscriptome	237	Y
F028934	Metagenome / Metatranscriptome	190	Y
F033496	Metagenome / Metatranscriptome	177	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208352_100307	Not Available	621
Ga0208352_100336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. A3M-1-15	606
Ga0208352_100515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528
Ga0208352_100526	Not Available	524
Ga0208352_100540	Not Available	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208352_100307	Ga0208352_1003071	F001472	AIPRGGSLMRYKVGAEQLQQVPTFVHRPDTAFRASRVAPAGPTHAVCTRTGQTACGITAEGLAVLDQDWEEAFFVEKCPGCFAAVLADASDS
Ga0208352_100336	Ga0208352_1003361	F028934	LIIHLIIQTILLYPSGAVWTDDAAHVSRLDPSGADQIDAEHQATD
Ga0208352_100515	Ga0208352_1005152	F018073	MRRGGSLLITILLLVAAFWAGIQYERNNCRIDLPNSTNQVDQSVKCRDYKGVDLPG
Ga0208352_100526	Ga0208352_1005262	F033496	VSGSDGSLPQDEGVADPAGEVEAALAGLDERDPAEHADLFEAVNAAILAELRRLEAL
Ga0208352_100540	Ga0208352_1005401	F013569	MKEKKLTLSKETLRTLDEKELSQIVGGDQSGSHTPPQAGPNSCPNTKPHGCS