3300026628: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_22 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026628
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114675 | Gp0119855 | Ga0208296
• Sample Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_22 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27062018
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → oil field production water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087432	Metagenome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208296_100045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	52240
Ga0208296_103177	Not Available	1343
Ga0208296_104657	Not Available	926

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208296_100045	Ga0208296_10004584	F087432	MIIYENGEYTPCTYRVTLQNRGVEETHYANFRTHWEDMVAKHDRLTNLNFEQITFSAEQDARLQEISELNIPQGFQAEVREYVENGNFPEWYEHPLSDLKLKKERLQHQNDIDEAYQMILESEGLI
Ga0208296_103177	Ga0208296_1031773	F087432	MIIYENGEYTPCTYRVTLQNKGVEETHYANFRTYWEDMVAKHEYLTNLSFEEITFSAEQDARLQEISELNIPQGFQAEVKEYVENGNFPEGLNNPLAGLKYKKEMNDAYKMILESEGLI
Ga0208296_104657	Ga0208296_1046573	F087432	GEYTPCTYRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLSFEEVSFSAEQDARLQEISELNIPQGFQAEVREYVENGNFPEGYEHPLSDLKLAKEREKYNEEINDAYKMILQSEGLI