3300026531: Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - PIR-30

Overview

Basic Information

• IMG/M Taxon OID: 3300026531
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046784 | Gp0296300 | Ga0256835
• Sample Name: Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - PIR-30
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 565819585
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → rock
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Pacific Ocean: East Pacific Rise
• Coordinates
  • Lat. (^o): 9.775
  • Long. (^o): -104.2801
  • Alt. (m): N/A
  • Depth (m): 2513

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027047	Metagenome	196	Y
F045470	Metagenome	152	N
F052283	Metagenome / Metatranscriptome	143	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256835_1000393	All Organisms → cellular organisms → Archaea	33347
Ga0256835_1013012	All Organisms → cellular organisms → Bacteria	3785

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256835_1000393	Ga0256835_100039354	F045470	MIYTEFEPVVSPRMNVRVLPDYGFYRVLTVEPIGIIIKDFGETLAPGTEARNKELQEVYMQDNELAQWRIWVLDPVGIKLKVVGQERLRGSTKYSTSVLYSFSPDTNEDDGVSQFFSYEDEKIYVDIANLTYDILTTQRIKLMGYKYVLEKLEEEPEIYTDIPFASVR
Ga0256835_1000393	Ga0256835_100039364	F027047	MDWYSLGIAVFSAVVYSLTMFVKKNLNSENPQSFDVAKFITTLIWGAIVGVVLQMSGAPINEQSVEQQFAMYTGLIAVTENIVKAIIRAFKG
Ga0256835_1013012	Ga0256835_10130123	F052283	MTAKQKSLVIGAIIGAMLGALGGYLFGRGAEAARERGSGVLSLKSVPAGEVVRLFIAVMAVLRGIAELGERL