3300026493: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0937-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300026493
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296235 | Ga0256786
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0937-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 308542029
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F051903	Metagenome / Metatranscriptome	143	Y
F054554	Metagenome / Metatranscriptome	139	Y
F071833	Metagenome / Metatranscriptome	121	Y
F096377	Metagenome / Metatranscriptome	104	Y
F098404	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256786_1011005	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2957
Ga0256786_1092633	Not Available	798
Ga0256786_1118327	Not Available	674
Ga0256786_1143555	Not Available	589
Ga0256786_1149789	Not Available	572
Ga0256786_1156407	Not Available	555
Ga0256786_1169631	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256786_1011005	Ga0256786_10110052	F002654	LNYQTFNDKVEGQKGNSPEQVFKVPKFLLSESKEVFKLYNQEIGLEAAIF
Ga0256786_1092633	Ga0256786_10926331	F051903	EEMSPEMCEQIAQVRRKPQRIGIGHILFLDETHKREGDVDSYSIFLPGEPPIIETSTTSPYAARYDMIACCSGHTVLPPIIYAPKERGKGVNQDMLLQFIRNPLAQAAGALDQYPLLLLLDKATIHSEAKILQEFHDWGCQELTEVLRIPTASAKRLSPLDNSLFNLWRQRVLASGALTKTNIKSRMSDAWNSFTSAELRAQYRHCGLLRHQNVYFDCPDPASHRHDS
Ga0256786_1118327	Ga0256786_11183271	F054554	MLGKIKKGMGDVKASADIETEYLMAKNKNNFDHPAENGVRIKAYQDAFTAADDFLDRIKAWTDRYQDLINAEIKMLEKMNASASLASISSIFSTFSGAQNNVIQIRQQQLGKVIEYIQTPAKKFIGDQTPIRNKIDQTNKAWIELRYWKKKGGKHVEEEKNAQTAYDEHISALFRMFDTNIDAQVAQWVKYFADFEVEFF
Ga0256786_1143555	Ga0256786_11435551	F071833	SINIKQPNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAINDPEIQACRKEENERFANELKDTFSQL
Ga0256786_1149789	Ga0256786_11497891	F071833	PNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL
Ga0256786_1156407	Ga0256786_11564071	F096377	SFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKSIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE
Ga0256786_1169631	Ga0256786_11696311	F098404	NGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHAGHDKSPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPSILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPKECHLGPK