3300026442: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0936-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300026442
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296234 | Ga0256785
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0936-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 177660502
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa → Chlorarachniophyceae → Lotharella → Lotharella oceanica	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Myxogastria → Myxogastromycetidae → Physariida → Physaraceae → Physarum → Physarum polycephalum	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005470	Metagenome / Metatranscriptome	399	Y
F028371	Metagenome / Metatranscriptome	191	Y
F033655	Metagenome / Metatranscriptome	176	Y
F034478	Metagenome / Metatranscriptome	174	Y
F054479	Metagenome / Metatranscriptome	139	Y
F054554	Metagenome / Metatranscriptome	139	Y
F071833	Metagenome / Metatranscriptome	121	Y
F080697	Metagenome / Metatranscriptome	114	Y
F085035	Metagenome / Metatranscriptome	111	N
F098404	Metagenome / Metatranscriptome	103	N
F100108	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256785_1036834	Not Available	1046
Ga0256785_1048079	Not Available	882
Ga0256785_1048527	Not Available	876
Ga0256785_1048749	Not Available	874
Ga0256785_1050450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei	855
Ga0256785_1067446	Not Available	707
Ga0256785_1078277	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	639
Ga0256785_1087512	Not Available	593
Ga0256785_1090540	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa → Chlorarachniophyceae → Lotharella → Lotharella oceanica	580
Ga0256785_1091331	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Myxogastria → Myxogastromycetidae → Physariida → Physaraceae → Physarum → Physarum polycephalum	576
Ga0256785_1102325	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	533
Ga0256785_1105487	Not Available	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256785_1036834	Ga0256785_10368341	F034478	RKHLRVLYSSKMEIEQNTLHRNRPTILRKVVLYGQPQEGKNSFDHREEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL
Ga0256785_1048079	Ga0256785_10480791	F028371	VVVNESFLVSASDDGLDVSRLLDFRSTFDDLLLGEFNTVMLKVPLSERSSIDLDDTALGQSVGSDEFVVGGVVDDTDDLGLSGDLFRSPGEVSGVESEGLEFVVSSSNSVSSDGLFTDLGESGRTTRFVLLLLLVDGHTTTGKSSLVSRVSGDTHCV
Ga0256785_1048527	Ga0256785_10485271	F071833	MNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFESVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDVEACRKEENHRFATELKETFSQL
Ga0256785_1048749	Ga0256785_10487492	F080697	VQLLLLAGLDLGLFLTSDLLSLGLKFLSGLSVVDLGFEDFHSSKSVFGFVLEEIIVVVIDQNETSSSATTEMSVEAESDDVLDISLELLGNEFGDSLVGDISLAGMEDFQDHLLSGEKSV
Ga0256785_1050450	Ga0256785_10504501	F054479	MRHDMESCDQGGEDRDKTWLDGPVASVKGKLSDDLAPMDRGNGEEQVRSRSMYQ
Ga0256785_1067446	Ga0256785_10674461	F054554	MLGKIKKGMGDVKASADIETEYLMAKNKNNFDHPAENGVRIKAYQDAFTAADDFLDRIKAWTDRYQDLINAEIKMLEKMNASASLASISSIFSTFSGAQNNVIQIRQQQLGKVIEYIQTPAKKFIGDQTPIRNKIDQTNKAWIELRYWKKKGGKHVEEEKNAQTAYDEHISALFRMFDTNIDAQVAQWVKYFADFEVEFFSNAANVAPRV
Ga0256785_1078277	Ga0256785_10782771	F033655	VDSLFSVLSALLLSDTFNDDVGEVGHTDSLEHFLGVGSNSNSVDVDLGLFRDVVQSSFSFFFLDLEGDTSDGATSLDSLHQVSSETGDFISHSLGGEDTNIAQDLLVEVEISGELAVVLFDQDLGGSLDSLSSDSSHGLRVYFD
Ga0256785_1087512	Ga0256785_10875121	F005470	VEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE
Ga0256785_1090540	Ga0256785_10905401	F100108	SEMEALAEAEAMDMSSQVPIPAPIAIQAAPTTPDPSGLTPAGTTPAGNEDRSEVGMCEVCMYVMENKMQHQPYLCKGLKDPHYQNLCVQVMESLMWWVSNQVYWVNYGCQMNQNGAVSWVRPCPAHATCSWLQHLYLRKPFCAEDKNFPKPA
Ga0256785_1091331	Ga0256785_10913311	F085035	NIDPQSQCNLESPTATPTQYYSLIDPGIPSSIYAYTYHQINRSDVRGKPTMAEAFGDIVKWVQKFSTANAGEEDLFVFVMPHFAKMEKITLAYELSRANLQAPPNWVFVNATNILEKNLPFLDKIQLDHIYSHLYGVAPQRLHRADADTKTVKECLAKVFPDAERFKDAIYLEMAQDVSKFL
Ga0256785_1102325	Ga0256785_11023251	F098404	QIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEIIHDVKKPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPSILAYFGRFSAGNEFSYYVEQWKTDKPHSTWFEIPRECHLGSQ
Ga0256785_1105487	Ga0256785_11054871	F071833	IKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL