3300026430: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0931-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300026430
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296229 | Ga0256780
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0931-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 154392856
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	1
Not Available	3
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005470	Metagenome / Metatranscriptome	399	Y
F035602	Metagenome / Metatranscriptome	171	Y
F064333	Metagenome / Metatranscriptome	128	Y
F071833	Metagenome / Metatranscriptome	121	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256780_1012735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	1800
Ga0256780_1041772	Not Available	922
Ga0256780_1048439	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	836
Ga0256780_1051432	Not Available	802
Ga0256780_1051443	Not Available	802

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256780_1012735	Ga0256780_10127351	F035602	MLVTVNQRTHSVAVLTSGPSLKGINISMSRXDSPDHRQKPEELQKTESYIHMSASNEIKSWLETYPRLNWRLTFDFLLAPENSKAVEFSDYGVACFVKGFQKEFIDRDYIEALNWYETGAMQYDSICLFRLHEIYIGDTHFKVPYDERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVATGGLFSKLFTFYATKNNFPEILPELKNLSTDILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVDTILDMLTNDILFDNFFQNYITHIKLLKAKKKFAHVFQRRLETDCFWVWSFSFLVSMKNYYLAVLQSYDETFSDGSLVLKWKNTASWVNNFVGFCNEKGIGTTKDANKALEAYDRDMREMPRVLFSRFRHILIRKQAMTNSQQPFQEESDPQLEAEVTELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQWYQKGVDSDTESCLKNHLLCNEGWRMKCDRRLQKLKMKKGLQTLIINKNQED
Ga0256780_1041772	Ga0256780_10417721	F071833	QQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFESVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDVEACRKEENHRFATELKETFSQL
Ga0256780_1048439	Ga0256780_10484391	F064333	AWAGLRKAAEALRPQVEPKIRDMVEPIFKAENEIIATMRERVMSVLEPLLKEHVTPHLGKIVSIIKSPMREAFAESCNLFDDKISKWTPNGGEMEKSFRDLDYFAKSYWEMRDALKKTDDMYEPLWLLREIFSDIYPWGLIWKAHNLVYKHTDNAVYTWEQAMLKEKNPELAEPIKRDVIIKYRHDTDIATNKYYAHILKKIVLPPFEAVVHPVAKHLIEPLADAIPQPLREFIDIKQMFEDLYKGILRDSIQIVLRADGPDDAFRSVAISN
Ga0256780_1051432	Ga0256780_10514321	F005470	NIYQISISANMSAINLRKEGQVITEFPPNLIKRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTSYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE
Ga0256780_1051443	Ga0256780_10514431	F005470	MSVKVRKEGQVITEFPKEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE