3300026409: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepC_8d (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300026409
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133460 | Gp0293500 | Ga0255307
• Sample Name: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepC_8d (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100992489
• Sequencing Scaffolds: 28
• Novel Protein Genes: 32
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	21
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → river water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007472	Metagenome / Metatranscriptome	350	N
F013303	Metagenome / Metatranscriptome	272	Y
F016245	Metagenome / Metatranscriptome	248	N
F017444	Metagenome / Metatranscriptome	240	Y
F020340	Metagenome / Metatranscriptome	224	Y
F023494	Metagenome / Metatranscriptome	210	Y
F032913	Metagenome / Metatranscriptome	178	Y
F033437	Metagenome / Metatranscriptome	177	Y
F039170	Metagenome / Metatranscriptome	164	Y
F042749	Metagenome / Metatranscriptome	157	N
F045790	Metagenome / Metatranscriptome	152	N
F051950	Metagenome / Metatranscriptome	143	Y
F052593	Metagenome / Metatranscriptome	142	Y
F054804	Metagenome / Metatranscriptome	139	N
F058592	Metagenome / Metatranscriptome	134	Y
F062785	Metagenome / Metatranscriptome	130	Y
F070194	Metagenome / Metatranscriptome	123	N
F076149	Metagenome / Metatranscriptome	118	N
F078267	Metagenome / Metatranscriptome	116	N
F079635	Metagenome / Metatranscriptome	115	N
F080126	Metagenome / Metatranscriptome	115	Y
F082153	Metagenome / Metatranscriptome	113	Y
F089936	Metagenome / Metatranscriptome	108	Y
F099393	Metagenome / Metatranscriptome	103	N
F100446	Metagenome / Metatranscriptome	102	N
F101271	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0255307_1007742	All Organisms → Viruses → Predicted Viral	1532
Ga0255307_1013206	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1180
Ga0255307_1018524	Not Available	995
Ga0255307_1018753	Not Available	988
Ga0255307_1019592	Not Available	964
Ga0255307_1020641	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	937
Ga0255307_1022314	Not Available	899
Ga0255307_1023016	Not Available	884
Ga0255307_1023382	Not Available	876
Ga0255307_1024857	Not Available	848
Ga0255307_1024881	Not Available	848
Ga0255307_1030669	Not Available	758
Ga0255307_1032090	Not Available	740
Ga0255307_1032397	Not Available	736
Ga0255307_1035328	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	703
Ga0255307_1035719	Not Available	698
Ga0255307_1036259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	693
Ga0255307_1043056	Not Available	631
Ga0255307_1045583	Not Available	612
Ga0255307_1046296	Not Available	607
Ga0255307_1050010	Not Available	582
Ga0255307_1052920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566
Ga0255307_1058564	Not Available	536
Ga0255307_1058978	Not Available	534
Ga0255307_1060737	Not Available	525
Ga0255307_1060867	Not Available	525
Ga0255307_1062818	All Organisms → cellular organisms → Eukaryota	516
Ga0255307_1064924	Not Available	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255307_1007742	Ga0255307_10077424	F052593	MAYIYPAPGVANVELTLEIEVSGDTNALAIPALQDITINNANDVFTWTQLDSGSKFNIPTTASNSIDMNLVVDQTVFFGSGSGADVAVNKGLFGLSKDKKLISFSLYMGDTNSGGSGKTISGTGYVVGLAPTVSADSPVWITPVSITVVGDYTVA
Ga0255307_1013206	Ga0255307_10132062	F013303	AVESETAIKKSSDLGGSQEVTIKKSKWNGSFLGSVNELLK
Ga0255307_1018524	Ga0255307_10185243	F101271	MRLLFDFSEAIAHQREALAKRDWAKLQQSIQALQQAMHQIASFPGGAEGVRHQLVASEGEARETADRLIEKVAIERRSSAELIRLQLQRLQALHTMTSLDEETTTYSESGTSK
Ga0255307_1018753	Ga0255307_10187531	F007472	HDLAVGIQLGKMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKIEFSYTRVAASDTSLASTLYNYTQTTFDMFGQTVNVQVANTKIVRTSQQTYAQLGASGVNEQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLVVVVAETIAFLAFLGISDKIAKDSPNCLSGPCQKFADTVTTQLGLSDLLVSGGNVAVSLQQVATWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0255307_1019592	Ga0255307_10195921	F045790	MDVHELREELLEQAMEHLDCKFRTQKKFALMFFEHKLKQGVPIDNYMSYMPQIYTPEEVLGLAKAMEAYVMGGNGK
Ga0255307_1020641	Ga0255307_10206411	F042749	RAPVSKQLHHASTTVAASHIPLTMTGSTWMKILAVPCILLVAMAAVMTFMPSDSSVQPTTAVALVQSSQHTQSLALFKHAAIEDVYVYAGKEEHTRHLVPFICRLIKRHRFRLNIHQFFSVDDAPLRSVLWSHDSRVVIFPPFESYPQISSKGFTDMRAYVAAGNNLVFMGSYIALQVMNDAFGFSLRDDYKEGPYYRNDRNVRGTEFEYLPSRLNEPSPRVYGAMAKSLPPGAFSLYDSLGSVVVFYVRYDLGTIVYIGYQFDNPYQIDSWVRVIHAAMAM
Ga0255307_1022314	Ga0255307_10223141	F079635	ENCCRDGYVRVMCNGRILQIRENVVNQSQCMNFLASARPADNLSECIHMANELATVENVKVICDWIAAHIEFASRNAPDDERRSFDQRFFLLNAAGHAAYAAATTDAEKADILDSRKDWLRWREDDPTNEDPKRSKYGGQRTAPFSRGGAAPLDRRHRTYEEIQHIMFVANFLELHPTDWHRTFAQKENERIAAQPPGPFQEYGLDPADKFAETVMELCCHILGDMILGCESPVDMQHRFPTLIGAKALTAKDRYDIATADLWIHGDDFMFEIVPEFQEAQRQEFEAARAAGMSPEDIE
Ga0255307_1022325	Ga0255307_10223251	F100446	MDIQDPAKQCPDKAAIIAQNCKGVFGGALKDCGADICLGVTPAEAGSDAHKGQVTTKLIKLLPQTNAEQKGDTCMLLDQLKQVDKLPRTGGKSFSFSTFIKQEGERLQGTIARKGNEWALESNDDGDVIFTSNGVSCKAPKVIGRTYKNIVAVSSATEQKIKIVVDGKEACSVAGKLFTEPLDAPLNLGSISDHIQAKVAKPTYIASGVRSNEIGLFSNEKPECIGA
Ga0255307_1023016	Ga0255307_10230161	F080126	MKKVTLSLAAIALVGLYAGSASAQCAFDIAPAKGVRGSMVRNYAPCPGTENPTANTTTQGGTAACTPVTPAEFSGNGTLYSYDVKGKCDVRTSAKLVSDCAEVEESAGNNLGLAPGACHVTYVTSKCSGILAQDGVTPAGASDDGWALATLSRATLDDPSNGDMTVIDFPVTFLYSTPEKGKMEVDSSSAQALAPLVGATGAKLPPCTQIEVVNVIIKDPAGLPFAKLGSATVPK
Ga0255307_1023382	Ga0255307_10233821	F007472	IQLGKMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKVEYSYTRVSASDTSLASSLYNYTQTNFDMFGQIVNVQAANTKIVRTTQQTYAQLGATSVNQQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFVGITALRTILIIALLIVVSAEIIAFLAFLGLSDKIATDSPNCLSGPCQKFADTVTTQLGQNVITINSEAAVPVSLQSVATWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEVL
Ga0255307_1024857	Ga0255307_10248572	F070194	VVFDTETSCQAFPVYDMAWRIVDRQGREYNRGSYFMPDIIERITPIFRKHEEYPEYVAKGHVEQRFYQDVKDTFNRQVKTLREKGHRILLVAYNADFDRKALKRTAELMGGSRRSRFFRFEPEWVDLWQYWAESAPLHYTSERLTENGNWKSSLEEVFRFENHNPEGYAEKHTAWSDTDDAISVLEKVIRRKKRLPVYKGDAWMPGGWRALQKRCPGPGKTLALSKG
Ga0255307_1024881	Ga0255307_10248811	F080126	MKKITLPLAVVALVGLYAGTASAQCAFDVAPAKGVKGSMVRNYAPCPGTEHPTSNTATEGGTEACTPVIPYQGGTGNSTLYTYSSKGKCDVQTSAKLVSDCSALTDASGALLGLQSGPCHVTYVSSKCSGILGTDGVTPIGAGDIGFSLATLTRATFNDATNGDMTVIDFPVTFAYSTPSGGKMAVKSSSAEALIPLVGQNNADLPACTSLEIVDVSIKDPDGLPFAKLGGA
Ga0255307_1026597	Ga0255307_10265971	F039170	RGGDADLSLIDVCGVSGGDDSSCSRNPGQGFAYSVGDPHYRTWDNAHFDIQPHTYWGEIVLVQHKRMGGGDIEVQTATVPWFHNSWSESEHHHGGPKGNTGLAIAAWGNVIVFYARNQLGSYFLNGNQVTWHDHGWTTIAQGIQCAKSGRHYNFLIDKGTGYLRIWGYMVGSNNIDVYGHASGSWATGKSLTGAWADWNGDAGNDQAIIHQLNARGKLSVLGTPRSYFKNKTPRTSTNGQFMLAFDMELDESQSRVIPGETITMEIQEPTKQ
Ga0255307_1030669	Ga0255307_10306691	F076149	MNKLLLTTLGMVAAVSAAYAQGTFNANNNYTPAGASAKAFVLDLNGNPLAKANGRVEILSGGTSLSPNGSAGVALTLDGLFFINGLVAPGAGLGGTANLVVRAWDVTTGATYADATSRGSVNVVISSLGGGTTPPATFGNNSDFKGLKLEGGGVIPEPSTVALAALGGARLFVIARRQR
Ga0255307_1032090	Ga0255307_10320901	F033437	DATLRGMRMSRSHGGTVLTVTGRDLSSEASAPGSDAPCRERRAGRGADTPATNVIRVGTFTTGSAPAFGRPFAPRYGSDLLPLRLHFAFAAG
Ga0255307_1032397	Ga0255307_10323971	F099393	QRERETLMLVERGMPMRRFFPHGETQAPDSACGQVTRSGLVASRVRKVVFFSVCLPALLIALGAGDSLNLAYGQSESNAAVPTAVRATESGISDQNRPTRDRSEPTVTGAAMHVALFVPR
Ga0255307_1035328	Ga0255307_10353282	F058592	VPSALRKYVVVAAGETVTVLPVPTDVPPQLPLYHLQLAPAPRLPPVVLSVVLWPLHIVVVPLIEVAGTDVS
Ga0255307_1035328	Ga0255307_10353283	F058592	VVEAGATVTLLPVPTDVPPQLPLYHLQLAPAPRLPPLTLKVVFLPRQIVVVPVIEVAGTDVS
Ga0255307_1035719	Ga0255307_10357191	F089936	KAYFMKKALIGMAVGAMALGASVVPASAGYLDETETLWDGIAGTDAGSTDGSSLCNDGQSDIFEALVLTGGWAERLDTDGNGKPRYTVFQPYDVILNGLLGALGLEISDLNSQPAVVQGVLADHIANGSFDENELEDADLTRITMRSGFVATLSNSEYDIPGALIAGTFGERSIYDNVYIEGSKIQNGSPYSNGWLYCIAGIIDSTPQVSHEGLNSEDTPNDGTPGGTNSLP
Ga0255307_1036259	Ga0255307_10362591	F017444	LFLKPNQSVDEKVRDFSYQAIDEVLKTIGEIYEQEY
Ga0255307_1042312	Ga0255307_10423121	F100446	SDAHKGQVTTKLIKLLPQTNAEQKGDTCMLLDQLKQVDKLPRTGGKSFSFSTFIKQEGERLQGTIARKGNEWALESNDDGDVIFTSNGVSCKAPKAIGRTYKNIVAVSSATENTVKIVVDGKEACSVAGKLFAEPLDAPLNLGSISDHIQAKVAKPTYIASGVRSNEIGLFSKEKPECIG
Ga0255307_1043056	Ga0255307_10430561	F032913	SVRHLLINVKAEALGIQTKEDGNWIFTNPFGKGADPPDQDLAPFRGQITELTTKSEKISTDLKDLIKRCHSARNDALVLDSELYDEIHKAKVISAAAVQGIHHHLDHVESFNHKDYDIVHRVDAKLNDKFRITRHRLNGMINLANAMSARQPNEVSEVTALATDLLIVNAETQERLGRMANLLDSIEFERGFRAKQ
Ga0255307_1045583	Ga0255307_10455831	F078267	DRSKTLEREYVQKLIAFHETQAQVASEMSAFASSFDASFNELLTTRESAYNQMLNEAIELKLGRLYEVEKRSLAIFQDLLVEGMTETLQSIAEDEDSEESDLAQLEMILESPSEMTDYEVVENAGGYDGSDAVWNAEYDASDDIEYELLGDATQVPAEVFADPNSIVELYRENDFLDK
Ga0255307_1046296	Ga0255307_10462961	F020340	GTHFRLRFSYNSLTVDSNEFNVRPNHMHVSVHPSDGQYGSGASKADIGSGITVQARDGGNNVLTGADNTNAGSDTVVVTVLEASGSVLDANLLGSKGLFLSSGARTFADLGLQGDAGTHFRLRFTYNSLSVESNEFNVRPNHMHVSVHPSDGQYGAGASKADIGAGITVQARDGGNNVLTGADNTNAGSDTVVVTVLEASGS
Ga0255307_1050010	Ga0255307_10500101	F051950	STEASYQLNFNVGFSTTRSDVLVHLAQXQYXXXFXFAFLXSFYYLVASRVVRYRSLKMRPKMSTSFRPHGKXGDFLAAVIPAIXCLNILTNSNFILRLIEXQSESSLFTIRVRARQXYXIYKFELKNFTDILTVPKNVGYNRXCVNTFGDLQVAEDYLYVLQLRSQNKXVKNYXTEVLQKTGGIKKNHIVAPQE
Ga0255307_1052920	Ga0255307_10529201	F023494	MKGNAGLNRAFISFPQLNRLVTTTNFIDKKSRVREPLFITSFQLNQLSKVKTKELG
Ga0255307_1058564	Ga0255307_10585641	F082153	LELPAVAAPMVKPVTMTVTAVLAATAAVAVVMTIWVLVGAATLPPTPLIVAAGAPWLLEKNPDGYVNVMVLPVASAPPAEVVNENVAAADVLPLTRSDTAITNEGLVT
Ga0255307_1058978	Ga0255307_10589781	F016245	DVVGGSVTGVLPAIVNGLGLNGPSITLSTYLQSVSSSVLMTVSFTPVDAVPSNGRLIVTLVGAGFACGANTAVTFLSPAGASGSVSISAGLVLTLQLSGGVFNAGGVVQFWFGGVTNPSSNQSQVNNLEAVTTLSTGDVVGGSVTGVLPAIVNGLGLNGPSITLSTYLQSVSSSVLM
Ga0255307_1060737	Ga0255307_10607372	F082153	MPVELPAVAAPMVRPVTVTVTAVLAAIDWAAMVMTIWVLVGVATVPVGGPPPLICTPGVPVLEKKLGGYVSVMVPPVASAPPAVVVNEN
Ga0255307_1060867	Ga0255307_10608671	F016245	NSNQSHISNIHAATLNAPGNIVGASVTGYLPAIVNGLGALVVGLSNTVRQGTGIVMTVSFTPVDAVPNDGRFVLTLVGAGFACSASTTVTFVSPADGSGYVSISAGLVLTLQLSGGTFSAGQAVQFVFGGVTNPNSNQSHISNIHAATLNAPGNIVGASVTGYLPAIVNGLGALV
Ga0255307_1062818	Ga0255307_10628181	F062785	TSLKNGNGWATLGAHIAHGQHSTFGTQFGFSHTNSHFGFGQAGLXHFQSHFGSSHTASHSGLGAWQCVTQXGCLHTVTHFGQSNISHHLSGHFISHSGFSHFTSHIAFLGSAQLVXHFGGSHTGSQIAGQCGSSHFHEHYGWQVVFDFNSENFQVLMMLLKLRT
Ga0255307_1064924	Ga0255307_10649241	F054804	MKIIITTQVYCNYGTANDPYWKAKGAGDYVVNLPCGYTEEDVKRKVELAKAVIELHNTPMWWETWLGYHVVEDSVLTDFESQQLEWDGKIDFPAEVLNV