3300026401: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0911-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300026401
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296209 | Ga0256760
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0911-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 85792341
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034190	Metagenome / Metatranscriptome	175	Y
F041209	Metagenome / Metatranscriptome	160	Y
F098404	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256760_1008492	Not Available	1690
Ga0256760_1028021	Not Available	837
Ga0256760_1031166	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	777
Ga0256760_1038036	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	675
Ga0256760_1042922	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	620

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256760_1008492	Ga0256760_10084922	F034190	VLGVTYPAAGKQHFAALLVYEGGDSWLELQDCRAEGLTPFTGDSAAFPHIWAVLQHLIDTRAAFLNGDWPFINAVLGLMAPSATHPCPICIVSHKCFLGTARYRTPADKHSRAAGQQPLLTIPPERIVPTPLHLFLGISNRIILDAFSELLGKERVEAAVKSITTVHSAGCSGAADLHDLNGPEISKWIKKECSATLLSAAKASSLVPAATAASHSILSRWLQQLQHCLLRSGDWSSDEIEAWRSVVSDIHQHWCAETSQAAFPKLHMLHHSVDFAERHRFLGRASEAQIESFHASFNALFHKQHRNQAGNTAERLRRSLADASLRAVQPFALPPSF
Ga0256760_1028021	Ga0256760_10280211	F034190	VGKKNLLHSSRYRTAGDRFSLHPSAAALLTIPPERIVPTPLHLFLGISNRIILEVFSELLGKDLVEETLKQATTIHSAGCGGKSDLHDLNGPEIRKWLKKDCCSTLLAAAAARNGSGMAAATRATFSILQRWLQQLHDHLLHKDDWEPEDIEAWRAAVDDIWQNWTAETSQEAFPKLHMLRHSLEFAERHRFLGRASEAQIESFHYEFKRLYHQQHLNMAHNEPERLRRCLADVALRAVQPFLER
Ga0256760_1031166	Ga0256760_10311661	F041209	DLRRKLQRIDKRRLLFLDETALRLSAAPSQTIVLPGEQAYVLATETSAYAKRYDMIAVCAGDRVLLPKIFSPKERAGAEVKGINRSMLLQFIDDVLAQAVEGLDRYPLTLVLDRATIHMDLDAIRQAFRDRGSEAISDILLMPPNAAKRLSPLDNSLFHDWKEECRRHCPATAKTIERIMSDAWEKLKPGPHYLHCGLTRSKDVYFDCPAPAKHKHAS
Ga0256760_1038036	Ga0256760_10380361	F098404	RSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHAGHDKSPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPSILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPKECHLGPK
Ga0256760_1042922	Ga0256760_10429221	F098404	DPQHIMRSALFFVVLAVAIACAAAAVRPKLSETFESNGFVSIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGFDHLNVYELQRFDKGKAYEVIHDEKKPICHTKSLTGKMPQLWDWVEKADFVRNFTSAGTLYDLWSYKTAGITLEVGVPQAHPDILAYFGRFSAGNEFSYFVETWKNIKPHSTWFEIPRECHLGPK