3300026395: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0935-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300026395
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296233 | Ga0256784
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0935-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 80176562
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005470	Metagenome / Metatranscriptome	399	Y
F033655	Metagenome / Metatranscriptome	176	Y
F034478	Metagenome / Metatranscriptome	174	Y
F035602	Metagenome / Metatranscriptome	171	Y
F052990	Metagenome / Metatranscriptome	141	Y
F059585	Metagenome / Metatranscriptome	133	Y
F071833	Metagenome / Metatranscriptome	121	Y
F096377	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256784_1011585	Not Available	1287
Ga0256784_1014158	Not Available	1160
Ga0256784_1028903	Not Available	758
Ga0256784_1030351	Not Available	735
Ga0256784_1031237	Not Available	722
Ga0256784_1032297	Not Available	707
Ga0256784_1032548	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	703
Ga0256784_1033361	Not Available	692
Ga0256784_1035029	Not Available	671
Ga0256784_1040025	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	614
Ga0256784_1050151	Not Available	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256784_1011585	Ga0256784_10115851	F035602	MSVSNEIKSWLETYPRLNWRLTFDFLLAPENAKAVEFSDYGVACFVKGFQKEFIDRDYNEALNWYETGAMQYDSLCLFRLHEVYIGDTHFKVPYDERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVATGGLFSKLFTFYATKNNFPDILPELKNLSTDILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVETILDMLTNDILFDNFFQNYITHIKLLRAKKKFAHVFQRRLETDCFWVWSFSFLVSMKNYYLGILQSYDETFCDGSLVLKWKNTASWVNNFVGFCCEKGIGTSKDNNKALEAYDRDMREMPRVLFSRFRHILIRKQALMKGQQPFQEEVDPQLEAEVTELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQ
Ga0256784_1014158	Ga0256784_10141581	F034478	MEIEQNTLHRNRPTILRKVVLYGQPQEGKNSFDHREEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL
Ga0256784_1028903	Ga0256784_10289031	F096377	LKINNNSDLVQIQSKYKSTALYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE
Ga0256784_1030351	Ga0256784_10303511	F005470	FCSLPTSNMSVKVRKEGQVITEFPKEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE
Ga0256784_1031237	Ga0256784_10312371	F071833	LTTKNTSFLIMNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFERVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDIDACRKEENHRFATELKETFSQL
Ga0256784_1032297	Ga0256784_10322972	F096377	YRWKSFNVTHHKVAGKDRKYLKIDNNSDLVQFQSKYKSTPLYFIPTDDHNVNVFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKAIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPSEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAHHE
Ga0256784_1032548	Ga0256784_10325481	F059585	FWNKYPHKDLDFVVYNRVIDIKRLEDDSIVVKKLMFCKKFKLIWAYTMEEMKIDFDQKILDLKTKVLAASKCIPTEGVERICYQALHNEQGKTLYTKFLESRSTLQKYYGKLNSGFEKGCKIVEEKCNEVLNKGGDSQSN
Ga0256784_1033361	Ga0256784_10333611	F071833	NIKQSNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL
Ga0256784_1035029	Ga0256784_10350292	F059585	FWNKYPHKDLDFVVYNRVIDIKRLEDDSIVVKKLMFCKKFKLIWAYTMEEMKIDFDQKILDLKTKVLAASKCIPTEGVERICYQALHNEQGKTLYTKFLESRSTLQKYYGKLNSGFEKGCKIVEEKCNEVLNKASDSQSN
Ga0256784_1040025	Ga0256784_10400251	F033655	VDSLFSVLSALLLSGTFNDDVGEVGHTDSLEHFLSVGSDGNSVDVDLGLVRDVVQSSFSFFFLDLERDTSDGTTSLDSLHQMGSETGDFISHSLGGEDTDIAQDLLVEVEISGELAVVLFDQDLGGSLNSLSSDSSHGLRVYFD
Ga0256784_1050151	Ga0256784_10501511	F052990	ELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQWYQKGVDSDTESCLKNHLLCNEGWRMKCDKRLQKLKLKKGLQTLIINKNQED