Sample 3300026395

Overview

Basic Information
IMG/M Taxon OID	3300026395 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114432 \| Gp0296233 \| Ga0256784
Sample Name	Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0935-MT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	80176562
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → research facility → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Iowa
Coordinates	Lat. (^o)	42.0	Long. (^o)	-93.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005470	Metagenome / Metatranscriptome	399	Y
F033655	Metagenome / Metatranscriptome	176	Y
F034478	Metagenome / Metatranscriptome	174	Y
F035602	Metagenome / Metatranscriptome	171	Y
F052990	Metagenome / Metatranscriptome	141	Y
F059585	Metagenome / Metatranscriptome	133	Y
F071833	Metagenome / Metatranscriptome	121	Y
F096377	Metagenome / Metatranscriptome	104	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256784_1011585	Not Available	1287	Open in IMG/M
Ga0256784_1014158	Not Available	1160	Open in IMG/M
Ga0256784_1028903	Not Available	758	Open in IMG/M
Ga0256784_1030351	Not Available	735	Open in IMG/M
Ga0256784_1031237	Not Available	722	Open in IMG/M
Ga0256784_1032297	Not Available	707	Open in IMG/M
Ga0256784_1032548	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	703	Open in IMG/M
Ga0256784_1033361	Not Available	692	Open in IMG/M
Ga0256784_1035029	Not Available	671	Open in IMG/M
Ga0256784_1040025	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	614	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0256784_1011585

Not Available

1287

Open in IMG/M

Ga0256784_1014158

Not Available

1160

Open in IMG/M

Ga0256784_1028903

Not Available

758

Open in IMG/M

Ga0256784_1030351

Not Available

735

Open in IMG/M

Ga0256784_1031237

Not Available

722

Open in IMG/M

Ga0256784_1032297

Not Available

707

Open in IMG/M

Ga0256784_1032548

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia

703

Open in IMG/M

Ga0256784_1033361

Not Available

692

Open in IMG/M

Ga0256784_1035029

Not Available

671

Open in IMG/M

Ga0256784_1040025

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea

614

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0256784_1011585	Ga0256784_10115851	F035602	MSVSNEIKSWLETYPRLNWRLTFDFLLAPENAKAVEFSDYGVACFVKGFQKEFIDRDYNEALNWYETGAMQYDSLCLFRLHEVYIGDTHFKVPYDERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVATGGLFSKLFTFYATKNNFPDILPELKNLSTDILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVETILDMLTNDILFDNFFQNYITHIKLLRAKKKFAHVFQRRLETDCFWVWSFSFLVSMKNYYLGILQSYDETFCDGSLVLKWKNTASWVNNFVGFCCEKGIGTSKDNNKALEAYDRDMREMPRVLFSRFRHILIRKQALMKGQQPFQEEVDPQLEAEVTELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQ
Ga0256784_1014158	Ga0256784_10141581	F034478	MEIEQNTLHRNRPTILRKVVLYGQPQEGKNSFDHREEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL
Ga0256784_1028903	Ga0256784_10289031	F096377	LKINNNSDLVQIQSKYKSTALYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE
Ga0256784_1030351	Ga0256784_10303511	F005470	FCSLPTSNMSVKVRKEGQVITEFPKEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE
Ga0256784_1031237	Ga0256784_10312371	F071833	LTTKNTSFLIMNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFERVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDIDACRKEENHRFATELKETFSQL
Ga0256784_1032297	Ga0256784_10322972	F096377	YRWKSFNVTHHKVAGKDRKYLKIDNNSDLVQFQSKYKSTPLYFIPTDDHNVNVFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKAIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPSEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAHHE
Ga0256784_1032548	Ga0256784_10325481	F059585	FWNKYPHKDLDFVVYNRVIDIKRLEDDSIVVKKLMFCKKFKLIWAYTMEEMKIDFDQKILDLKTKVLAASKCIPTEGVERICYQALHNEQGKTLYTKFLESRSTLQKYYGKLNSGFEKGCKIVEEKCNEVLNKGGDSQSN
Ga0256784_1033361	Ga0256784_10333611	F071833	NIKQSNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL
Ga0256784_1035029	Ga0256784_10350292	F059585	FWNKYPHKDLDFVVYNRVIDIKRLEDDSIVVKKLMFCKKFKLIWAYTMEEMKIDFDQKILDLKTKVLAASKCIPTEGVERICYQALHNEQGKTLYTKFLESRSTLQKYYGKLNSGFEKGCKIVEEKCNEVLNKASDSQSN
Ga0256784_1040025	Ga0256784_10400251	F033655	VDSLFSVLSALLLSGTFNDDVGEVGHTDSLEHFLSVGSDGNSVDVDLGLVRDVVQSSFSFFFLDLERDTSDGTTSLDSLHQMGSETGDFISHSLGGEDTDIAQDLLVEVEISGELAVVLFDQDLGGSLNSLSSDSSHGLRVYFD
Ga0256784_1050151	Ga0256784_10501511	F052990	ELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQWYQKGVDSDTESCLKNHLLCNEGWRMKCDKRLQKLKLKKGLQTLIINKNQED

Scaffold ID

Protein ID

Family

Sequence

Ga0256784_1011585

Ga0256784_10115851

F035602

MSVSNEIKSWLETYPRLNWRLTFDFLLAPENAKAVEFSDYGVACFVKGFQKEFIDRDYNEALNWYETGAMQYDSLCLFRLHEVYIGDTHFKVPYDERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVATGGLFSKLFTFYATKNNFPDILPELKNLSTDILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVETILDMLTNDILFDNFFQNYITHIKLLRAKKKFAHVFQRRLETDCFWVWSFSFLVSMKNYYLGILQSYDETFCDGSLVLKWKNTASWVNNFVGFCCEKGIGTSKDNNKALEAYDRDMREMPRVLFSRFRHILIRKQALMKGQQPFQEEVDPQLEAEVTELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQ

Ga0256784_1014158

Ga0256784_10141581

F034478

MEIEQNTLHRNRPTILRKVVLYGQPQEGKNSFDHREEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL

Ga0256784_1028903

Ga0256784_10289031

F096377

LKINNNSDLVQIQSKYKSTALYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE

Ga0256784_1030351

Ga0256784_10303511

F005470

FCSLPTSNMSVKVRKEGQVITEFPKEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE

Ga0256784_1031237

Ga0256784_10312371

F071833

LTTKNTSFLIMNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFERVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDIDACRKEENHRFATELKETFSQL

Ga0256784_1032297

Ga0256784_10322972

F096377

YRWKSFNVTHHKVAGKDRKYLKIDNNSDLVQFQSKYKSTPLYFIPTDDHNVNVFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKAIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPSEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAHHE

Ga0256784_1032548

Ga0256784_10325481

F059585

FWNKYPHKDLDFVVYNRVIDIKRLEDDSIVVKKLMFCKKFKLIWAYTMEEMKIDFDQKILDLKTKVLAASKCIPTEGVERICYQALHNEQGKTLYTKFLESRSTLQKYYGKLNSGFEKGCKIVEEKCNEVLNKGGDSQSN

Ga0256784_1033361

Ga0256784_10333611

F071833

NIKQSNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL

Ga0256784_1035029

Ga0256784_10350292

F059585

FWNKYPHKDLDFVVYNRVIDIKRLEDDSIVVKKLMFCKKFKLIWAYTMEEMKIDFDQKILDLKTKVLAASKCIPTEGVERICYQALHNEQGKTLYTKFLESRSTLQKYYGKLNSGFEKGCKIVEEKCNEVLNKASDSQSN

Ga0256784_1040025

Ga0256784_10400251

F033655

VDSLFSVLSALLLSGTFNDDVGEVGHTDSLEHFLSVGSDGNSVDVDLGLVRDVVQSSFSFFFLDLERDTSDGTTSLDSLHQMGSETGDFISHSLGGEDTDIAQDLLVEVEISGELAVVLFDQDLGGSLNSLSSDSSHGLRVYFD

Ga0256784_1050151

Ga0256784_10501511

F052990

ELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQWYQKGVDSDTESCLKNHLLCNEGWRMKCDKRLQKLKLKKGLQTLIINKNQED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026395: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0935-MT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences