3300026391: Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.4 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300026391
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132855 | Gp0267202 | Ga0232080
• Sample Name: Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.4 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79464087
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: New York
• Coordinates
  • Lat. (^o): 42.4447
  • Long. (^o): -76.485
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021795	Metagenome / Metatranscriptome	217	Y
F028541	Metagenome / Metatranscriptome	191	Y
F031111	Metagenome / Metatranscriptome	183	N
F034230	Metagenome / Metatranscriptome	175	Y
F049732	Metagenome / Metatranscriptome	146	Y
F055836	Metagenome / Metatranscriptome	138	Y
F056712	Metagenome / Metatranscriptome	137	N
F103516	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0232080_103999	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	3208
Ga0232080_115612	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1064
Ga0232080_118120	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	933
Ga0232080_120212	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	847
Ga0232080_123152	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	753
Ga0232080_123564	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	741
Ga0232080_124727	All Organisms → cellular organisms → Bacteria	712
Ga0232080_136196	Not Available	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0232080_103999	Ga0232080_1039991	F031111	KTRRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP
Ga0232080_115612	Ga0232080_1156121	F055836	MESCEGEVVAIYRKKWSRQFLGFVAVTLRWPMLLLLTLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPAASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFKKDRDLVGTIMKNLKLTRTLTGAKTIAVAGQGPRFFKSHFPYEQPFVYGLKGRVFSVVETVEQVAATNGLTRSETTVAILGVGEIGAAIIANLKEKGYRAVGIDIRIAEGRVEIGREGMETLRKADLIVVQTPRGDDVVPYYENLKKTAILIDDAHPRITVRPGEVKFYKVAIGRSGVEFKPPLPGYEKYWIPGCVQESMVVAESGKVDMSQEDFNKRSKEL
Ga0232080_118120	Ga0232080_1181202	F028541	TMDEKERLKLVNRLKTVKTSEERDQILWYLAGQDKAARGKAQRAEPTGTGKPAPGKTEEKPRVSLPVGKLGGVGSFTALLFLFYGLVSIVTAVMKILQGQMEGDEIKQLIMGGLFLLFGVVIYVRARRAQRKTAEET
Ga0232080_120212	Ga0232080_1202121	F049732	MDVFRILFNILLFTASLFAAALFVEKIYAGRWKWAAFPVLLAFILAFALVPGTLIGVLEALPGELSPANAATLALGGTAAGF
Ga0232080_123152	Ga0232080_1231522	F021795	ERKKAEGKSSFTVVLSHQAREILAEEKEKTGESYAVIMEKALLGLKKQGYTPPILRHFPRREEVLARVAAQDSPPAPASNAGRVNHEGDRQPRILIDDLANYPTLEDIEREQAAKELNGVHVLRSSEGLITRLLRSSAGPFGRKKKWFK
Ga0232080_123564	Ga0232080_1235641	F034230	MLSGFVLFGAAAPARSAEAGPETNKLKVKVGPFFIQESDKKISLEGAAPYVIRKGKRVNITVTVENYGKEKSEPVRLRYVETDGKAGEPRLYRVEAIEPGKKWQRTFMARWDTSGRKSVTAALVTLEDKPLRDAKGKPRPDTAHTGSIVLTAKQM
Ga0232080_124727	Ga0232080_1247272	F056712	GANSKIPAAGLVGLLEGIEKSLVRRLMKSSGKQPFLIVLLIIFLSMNKKGKKKSEPERDENYWRVIGGL
Ga0232080_136196	Ga0232080_1361961	F103516	LLAGCGAATNVQVMKPVNGEIQSFLTPELLKSRCYNFMSAGREGEMIAKKSNVLLNECNLTAKDAVNRVTYLTYTTKDAYVAESGENQVISKRVMGNKDIEIESSLFYEKEGGVRGIQVLINDFVDKNYVKGYEPEWVVRALYREVKLQDGKIVVVRDGMTRDEFMKEDEIE