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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026384 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0238654 | Ga0213907 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0896-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 43137802 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 2 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000203 | Metagenome / Metatranscriptome | 1619 | Y |
| F001296 | Metagenome / Metatranscriptome | 728 | Y |
| F004323 | Metagenome / Metatranscriptome | 443 | Y |
| F005880 | Metagenome / Metatranscriptome | 387 | Y |
| F007777 | Metagenome / Metatranscriptome | 345 | Y |
| F010923 | Metagenome / Metatranscriptome | 297 | Y |
| F014988 | Metagenome / Metatranscriptome | 258 | Y |
| F015442 | Metagenome / Metatranscriptome | 254 | Y |
| F020183 | Metagenome / Metatranscriptome | 225 | Y |
| F030355 | Metagenome / Metatranscriptome | 185 | Y |
| F030638 | Metagenome / Metatranscriptome | 184 | Y |
| F033328 | Metagenome / Metatranscriptome | 177 | Y |
| F042356 | Metagenome / Metatranscriptome | 158 | Y |
| F044917 | Metagenome / Metatranscriptome | 153 | Y |
| F054254 | Metagenome / Metatranscriptome | 140 | Y |
| F056193 | Metagenome / Metatranscriptome | 138 | N |
| F059693 | Metagenome / Metatranscriptome | 133 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0213907_101135 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 2867 | Open in IMG/M |
| Ga0213907_107495 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae | 1203 | Open in IMG/M |
| Ga0213907_114562 | Not Available | 801 | Open in IMG/M |
| Ga0213907_114601 | Not Available | 800 | Open in IMG/M |
| Ga0213907_114650 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 798 | Open in IMG/M |
| Ga0213907_120897 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 629 | Open in IMG/M |
| Ga0213907_123949 | Not Available | 575 | Open in IMG/M |
| Ga0213907_124061 | Not Available | 574 | Open in IMG/M |
| Ga0213907_124205 | Not Available | 571 | Open in IMG/M |
| Ga0213907_124563 | Not Available | 566 | Open in IMG/M |
| Ga0213907_125833 | Not Available | 547 | Open in IMG/M |
| Ga0213907_126588 | Not Available | 537 | Open in IMG/M |
| Ga0213907_127155 | Not Available | 529 | Open in IMG/M |
| Ga0213907_127956 | Not Available | 519 | Open in IMG/M |
| Ga0213907_128419 | Not Available | 513 | Open in IMG/M |
| Ga0213907_129302 | Not Available | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0213907_101135 | Ga0213907_1011352 | F014988 | MSFAPTSPITGATVAGLTSPTYTIVTDVAPSINGKQYAVTALGGTQTNVDVNTVSKPFSISFFRPAVLKVLPQASPVTGVIKSVPMNTYKLITRKGVQPAANQSAMTARITTVIEVPAGSDTYEPEDLRALISSHFGVGSQQASGIADTIVSGVI |
| Ga0213907_107495 | Ga0213907_1074952 | F030638 | MAAAADLTLKNNAAANVTFSVYSVNPDSVEWVESGATSILGTSRFVLSRVIPADKSAGVYRTRGKLTRPVINGTSGLLDGTLTATFEILRPAKLTVAETDELVARFKEAVAQAIIKTAAESGAIPT |
| Ga0213907_114562 | Ga0213907_1145621 | F033328 | RRKANARMSPKASRIIPGDWGKAESGWLTQPLLKSDRKVETAEA |
| Ga0213907_114601 | Ga0213907_1146011 | F042356 | VHQHGAGDSGGFNKPFETAQRKSSKDEQTERTSREEHAGQASRVKIFRAPAMLKTTPLACERKAT |
| Ga0213907_114650 | Ga0213907_1146501 | F020183 | MSLSVNAKTYTADSFGTNAVVYIGTGHTTSVKDDVRLSRVAPKSTATFSGVGKTNAKLSRTLTLTGALTPTWDAYVEIQCTIPVGFTGADIDTMLNDMGAYLASASFKTLAKNQQIAY |
| Ga0213907_117029 | Ga0213907_1170291 | F000203 | ALTLAGAAGFPTLFSTASGVFGLVAGPSVTLRQLDY |
| Ga0213907_120897 | Ga0213907_1208972 | F004323 | MPLVGFRRQEGRATPVVATLSPVARDYPSRALSDVFQAAALR |
| Ga0213907_123949 | Ga0213907_1239491 | F015442 | VKGQSFQASERSLRGVGSEQEVLAGGLGSVDPQPSKDGGGESTKGRSGILFAKLSAGHAGGERGCESDHL |
| Ga0213907_124061 | Ga0213907_1240611 | F007777 | VRPVLEAVERKAASRSGLLPEMEADAHLRTDPQLAKTSGGEQGAHVSPDPDATFRLRMPVGEQTT |
| Ga0213907_124205 | Ga0213907_1242051 | F001296 | MEVAERWQLLRASERPLRATGSGQEAASGEPGSIDPAAGENSHWGAERRIVRRFCSQCSMPGMPVESQAGNQ |
| Ga0213907_124563 | Ga0213907_1245631 | F030355 | ISSLALRGHAPHRASRSIAPDVSPFNSPTGVFPTRRINAFRHAACCFRSGPVARNGLSLACNGCSFSEPPSQGQRSWPATSLPSARLHCPFGFPLRHHFPVRPGRRRHRRVNPVAALARASLGCSRGLHSPSGLLHPSGSKRSTASATTRPAFRIRPISSRSPMPVLFLGSASDHRSWSATFPEAHCS |
| Ga0213907_125833 | Ga0213907_1258331 | F059693 | GRRETSGSPVTPYGAQDSVGHPRCESGESEPGTHEVRVHVDRLGGRNRLDASRVFLAGRSQGLLGKKGASQEEVRSTA |
| Ga0213907_126588 | Ga0213907_1265881 | F054254 | LRGSVARPVLGVVERKAASRSGLLPVMEADAHLRTDPQLAKTSGGEQRAHVSPDPDATF |
| Ga0213907_127155 | Ga0213907_1271551 | F010923 | PWNDDPQPQLLLGRAAGSERESGGFVRWTGRQQALLNALIPKDVKVLKGSGGSRSGRPDRVVEVQRAPGIEAAATGATGFAVVEPKGGPGTGTIWQ |
| Ga0213907_127956 | Ga0213907_1279561 | F005880 | RREPFAPRCWFCPTADQCAGARLLPIPVEAYFSMRPFARQHRGLALRPIPVTASTFPAYIFETILRRDPARSAPHSRPRLAFCDLTRHDLRMEPVARSNLRTHDSPPDFGSPPGSLDPSGSKPSTRLRTTKLTLAGCPIFLRSPRRGNNFSHHSAPRIIGPDPLLPARLAVL |
| Ga0213907_128419 | Ga0213907_1284191 | F056193 | LRFRSPSEVHRSTPAPSREPEGSHVGRCFLSWALLPYDTFGTADPHFAGLPAPLRATSGVWVPPSRLPPSFLPTPFGAGASLGFSLQGVLLATIGTPSGAPCPLDVSRVDSPHPHGERADAAVFRALIPSRARSAIPDPEGPGAPMPSWAWTLQSIHSPLPSPPLWIAGD |
| Ga0213907_129302 | Ga0213907_1293021 | F044917 | ASLVGRSEPGTLIRGRRHLKMESGHGERREIGRSAQVGFQKAKLVEHYDPEGHKNPRRGVEAREAFWDIGLERIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |