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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026380 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0238657 | Ga0213910 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0909-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 40816814 |
| Sequencing Scaffolds | 19 |
| Novel Protein Genes | 19 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp. | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae | 3 |
| Not Available | 13 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001296 | Metagenome / Metatranscriptome | 728 | Y |
| F007777 | Metagenome / Metatranscriptome | 345 | Y |
| F010404 | Metagenome / Metatranscriptome | 304 | Y |
| F013305 | Metagenome / Metatranscriptome | 272 | Y |
| F014631 | Metagenome / Metatranscriptome | 261 | Y |
| F014988 | Metagenome / Metatranscriptome | 258 | Y |
| F016001 | Metagenome / Metatranscriptome | 250 | Y |
| F028190 | Metagenome / Metatranscriptome | 192 | Y |
| F030638 | Metagenome / Metatranscriptome | 184 | Y |
| F040271 | Metagenome / Metatranscriptome | 162 | N |
| F046763 | Metagenome / Metatranscriptome | 150 | Y |
| F055474 | Metagenome / Metatranscriptome | 138 | Y |
| F057921 | Metagenome / Metatranscriptome | 135 | N |
| F061584 | Metagenome / Metatranscriptome | 131 | Y |
| F085747 | Metagenome / Metatranscriptome | 111 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0213910_100218 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 3945 | Open in IMG/M |
| Ga0213910_100225 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp. | 3901 | Open in IMG/M |
| Ga0213910_100245 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 3825 | Open in IMG/M |
| Ga0213910_101634 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae | 2070 | Open in IMG/M |
| Ga0213910_103591 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae | 1486 | Open in IMG/M |
| Ga0213910_109893 | Not Available | 904 | Open in IMG/M |
| Ga0213910_111029 | Not Available | 854 | Open in IMG/M |
| Ga0213910_114190 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae | 743 | Open in IMG/M |
| Ga0213910_121110 | Not Available | 593 | Open in IMG/M |
| Ga0213910_121226 | Not Available | 591 | Open in IMG/M |
| Ga0213910_121415 | Not Available | 588 | Open in IMG/M |
| Ga0213910_121440 | Not Available | 587 | Open in IMG/M |
| Ga0213910_121686 | Not Available | 584 | Open in IMG/M |
| Ga0213910_122792 | Not Available | 568 | Open in IMG/M |
| Ga0213910_122853 | Not Available | 567 | Open in IMG/M |
| Ga0213910_123467 | Not Available | 559 | Open in IMG/M |
| Ga0213910_124092 | Not Available | 550 | Open in IMG/M |
| Ga0213910_127566 | Not Available | 509 | Open in IMG/M |
| Ga0213910_128410 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0213910_100218 | Ga0213910_1002182 | F014988 | VAFSPSSPITGAAVTGLTSPTYTILTDTAPNVNGKQYAVSALGGTQTNVEISTVSKPFTFTFFRPAVLKTLPQANPVTGVIKNVPMNVYKLITRKGVQPASNQSAMVARITTTIEIPAGADTYEPEDIRALISAHMGLGWNQASGISDTVISGIF |
| Ga0213910_100225 | Ga0213910_1002253 | F030638 | MAAAADLTLKNNAAANVTFSVYSVNPDSVEWVESGATTILGMSRFVLSRVIPADKAAGVYRTRGKLTRPIVNGTSGLLDGTLTATFEILRPAKLTIADTDELVARFKEAVAQAIVKTAAESGAIPT |
| Ga0213910_100245 | Ga0213910_1002452 | F046763 | MLADTQTLSKDCPTDVDTNTLAFVRRYGDSDKSVFSVAGLTPPVETKLSISHEASKDGTQRKMARTDLTVVDSFGVAATGSCHIVWTRPPNTAITNALMLEATNRLIDFCIEGGANGNVTAILNGEV |
| Ga0213910_101634 | Ga0213910_1016342 | F030638 | MAAAAALTLKNNAAANVTFDVYSVNPDSVEWVESGATSILGTSRFVLSRVIPADKAAGVYRTRGKLTRPVVNGTSGLLDGTLTATFEILHPAKLSTAETDELYARFKEAIGQTIVKTAAESGAIPT |
| Ga0213910_103591 | Ga0213910_1035912 | F030638 | MAAAADLTLKNAAAANVTYNVYAVNPDSVEWTEAGATSILGTSRATLTRVLPADRAAGVYRARGKLTRPVINGTSGLLDGTNTFTCEFLHPAKLSTAEVDELVARAKEFVALAIYKTCCETGAIPT |
| Ga0213910_109893 | Ga0213910_1098932 | F061584 | RRFPFGGSRNWCGISWSRHRATMASHEVGRSTECCERRSCKRIGLLAPTMTSLFPVSLCGVTPPPAPVLLRVRVHPPMSFTSPTEYEPLQTCPARFRAKRLPWGFPPHRGISIQSPLPTELPRSRSHVPPSAFLAPSTVCSSAHLAGLFHPTATSGIHLPGVISRCQAESPRR |
| Ga0213910_111029 | Ga0213910_1110291 | F016001 | VWESAIAATVFSRRLDPIPSWAFLLQVFAPDAVETPSRLLPLVALVATLSSHCRHRPSAFRHRAWLASLEAAYLLEV |
| Ga0213910_114190 | Ga0213910_1141901 | F028190 | MPTMASITVKKYDGTTDIVFDSLSASGGDGSPAVWRQDTGATAGLPVGLRKLFKLWTTWNGPKTARQMKFNFVVPYAVQDTTTSLYSAKDRVVFDGIVTIPQGLPSTEINEAVYQGLNLLASSLVKSSGASGYAPN |
| Ga0213910_121110 | Ga0213910_1211103 | F057921 | VQVTRQAACSPAGMHGQNVASGDGVTLSPLLPVAGFARQRINALVRVR |
| Ga0213910_121226 | Ga0213910_1212261 | F010404 | MRPFTLLQRSPALRQIPAAGSTFLAYIFKAALEFQLARSASHSRPRLAFFRLTGLDHCESPVANFLF |
| Ga0213910_121415 | Ga0213910_1214152 | F010404 | MRPFTLLQRSPALRQIPAAGSTFLAYIFEAALEFQLARSASRSRPRLAFFRLAGLDPRESPVANFLS |
| Ga0213910_121440 | Ga0213910_1214401 | F014631 | SDPLDRSLSDRHARPELGIRIGCDVGPLLPTAGLIQPRIVALVRVRSPFR |
| Ga0213910_121686 | Ga0213910_1216861 | F007777 | LRGSVARPVLGVVERKAASRSGLLPEMEADAHLRTDPQLAKTSGGEQRAHVSPDSDATFRPRMPVGEQTARGSL |
| Ga0213910_122792 | Ga0213910_1227921 | F013305 | VKGRFEQPEPVRNSLQAGFEALIRRSIKGKAGSNEDSVRRFLAARLMPCMPAGVALFNR |
| Ga0213910_122853 | Ga0213910_1228531 | F040271 | MQALPDLSRQFETAFRSPPTAARYRATIERSKLPACFFTALQSLASNPFGLLLLRPGSVCPSRGAIYVSDPLSNAGLCIFDWSPSLRSPSGFLGPSGSKRSARLPTDKLPLVLGPISLRSPPTFRFISSPTDQRSRSATAHQVCC |
| Ga0213910_123467 | Ga0213910_1234671 | F001296 | MEVAERRQPLRASERPLRATGSGQEAASGEPGRIDPAAGENSHWGAERRIARRFCSQRSMPCMPVESQ |
| Ga0213910_124092 | Ga0213910_1240921 | F085747 | ICLAAKLSAVMHGTELREQNRRTVSGLLPGAPFRAHRINAPWAVCWPDSVRSRHLVTAFHSLGTTACFQATIPRSKLPACYFNALPNRSSGPFDRSLLRPNRFAPGPVGLIAGGPFPGLRLGTFESASNLHSPLGVFTPARSKRSIRFGSEKLTFRRRPIVLRSPQPFYCVVLVADHRSRLAT |
| Ga0213910_127566 | Ga0213910_1275661 | F055474 | MPFQIKAFSRLGYPLAHLRRSPDFPSLPAARLQINDDGHGSMFQVRYVLRGSLF |
| Ga0213910_128410 | Ga0213910_1284101 | F055474 | MPLWLDAFNQLSSSQAHLRKPPDLLSLPAARLQINDDGVGSMLQVRYVLRGSL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |