3300026368: Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T75.r1

Overview

Basic Information

• IMG/M Taxon OID: 3300026368
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0131983 | Gp0293668 | Ga0255361
• Sample Name: Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T75.r1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121701487
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Peatland Microbial Communities From Stordalen Mire, Sweden
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0466
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020297	Metagenome / Metatranscriptome	224	Y
F032246	Metagenome / Metatranscriptome	180	Y
F038045	Metagenome	166	N
F041086	Metagenome / Metatranscriptome	160	Y
F048717	Metagenome / Metatranscriptome	147	Y
F056752	Metagenome / Metatranscriptome	137	Y
F062367	Metagenome	130	Y
F081380	Metagenome / Metatranscriptome	114	Y
F104110	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0255361_1001130	Not Available	3607
Ga0255361_1021742	Not Available	731
Ga0255361_1027311	Not Available	654
Ga0255361_1030958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	616
Ga0255361_1032667	Not Available	600
Ga0255361_1035690	Not Available	575
Ga0255361_1043993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	522
Ga0255361_1045183	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-1	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255361_1001130	Ga0255361_10011304	F038045	MIGFTPAEFNQVREAIAAAHLYCQAISPLLKARHTMMNKDQRQLAQLAPQAVAEGFNTIALITHRENRDPDAVDARPAIKLQDIDTEAMRDELENVSALVLPDLVYQMVCALGELPMYHELITAEPLTTHRAAILMAWTFEAGRRYGLQQALAIIDTTTTEFKTGTDAVLTAALNATLDLPSPELEHKPGEVIPFTYPSAEDLDRVAADEAAANATTGEPSDHKPTVN
Ga0255361_1003319	Ga0255361_10033191	F104110	EWFMYLGKDVATGDSLELGKVSDVAISNEGDVFYLVEKGENPNKRYYFSQQDVQTSDGRVITRSASEFTDDVAKRSHFLCALYGVEVRDTTNSRLGAIDNFVASPEGALVVIEDPQGSALLGRYRDLDLTRLSKFAVLKQLPPQDSFDNYLKNVDKNKLLTKGIACDLSKVATHEGLLTRIRKKLEQSEADRIIADRALID
Ga0255361_1021742	Ga0255361_10217422	F020297	MNFLQIIQTILSVAPSGIQLTQEVVALVQAIEAAFTASQTPATHQQAVASALGAHLAKTA
Ga0255361_1027311	Ga0255361_10273113	F062367	GHQESTRSEAQKNSPPHSSTSNLVSKTVPTPDNGDILFDQIDSPVIPPDTNVGIQGPAVDEQWIIETIKELQKKGCAEVSPAKLKDRFLKLYHLQEPLAGVKDALANLAPQHTSDFCKWLHQLQEK
Ga0255361_1030958	Ga0255361_10309581	F056752	LDKLGGSVGVGGTPSVNGNWRFTEWGAANEYWRYGFSGQIGNYMVRVDEMGLRFNFVGDLGATAHSSNGNRYRYQIVLPFRNGITTGAGGSAGLGSDENPDFDNAQYSISYIWHKKAMELLVPDARPLNAEMPFGHRDFGGKWQFVMDNLGADANGVAITNKRRNKGQFIADFRYYVRPLHTEFAEAIFHKREQFCIPQVSPCNP
Ga0255361_1032667	Ga0255361_10326672	F032246	MDKVTVEIDSKWVKIARSPLYWVVAAMQGISITFAPLFLYWSGKGQFCPGSGWIIVPACYAVILLVGLFYMRLGRAVISELRKKSAPD
Ga0255361_1035690	Ga0255361_10356901	F048717	VQTTVFSLSDGQVEFQVSAVPPWADADEFGQVAAELHRSPNGTSTLYRIPAGCSVPIHSGPGCALCQIISGRGKLVLPGGQEVDYHGPEIFIFEPGALHGWRDVVED
Ga0255361_1043993	Ga0255361_10439931	F041086	MTPDDQSATAAGLRPETAVICAGRPSSAGSEPLNIPVVLAS
Ga0255361_1045183	Ga0255361_10451831	F081380	FNLLVLDPIKRFPFQMNDILIGFVFMSCCIDYLSGFWWGENREIGMVRQAYVGFINEYFRPRGLYNAKGIYDSLRNGLVHLFTIKNSIYELTFDEPQRHLTVSHNGFIILNAGNFRNDLIDAANRYFNEVEKNPQLLDKAFQRYERDGFIRWVD