3300026363: Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T100

Overview

Basic Information

• IMG/M Taxon OID: 3300026363
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0131983 | Gp0293670 | Ga0255363
• Sample Name: Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T100
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 36055597
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3
All Organisms → cellular organisms → Archaea → Euryarchaeota	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Peatland Microbial Communities From Stordalen Mire, Sweden
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0466
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002998	Metagenome / Metatranscriptome	514	Y
F044388	Metagenome	154	Y
F066284	Metagenome / Metatranscriptome	127	Y
F076055	Metagenome / Metatranscriptome	118	Y
F078013	Metagenome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0255363_100002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	668653
Ga0255363_100003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	312346
Ga0255363_100008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	173888
Ga0255363_100180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13382
Ga0255363_101178	All Organisms → cellular organisms → Archaea → Euryarchaeota	2919
Ga0255363_102595	All Organisms → cellular organisms → Archaea → Euryarchaeota	1481
Ga0255363_104477	All Organisms → cellular organisms → Bacteria → Acidobacteria	986

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255363_100002	Ga0255363_10000214	F076055	MTHMTRTTVDVDRRALEAAQREFRTTGLSATMNAALCDAARRHMLKDFDVVRDIDGTPGEITAGREQRRRP
Ga0255363_100002	Ga0255363_1000029	F076055	MMRMTRTTVDVDDRALEAAQRELRTTGLSATVNAALRDAARRHMLKDFDVVRDIDGTPGEVTTGREQS
Ga0255363_100003	Ga0255363_10000367	F044388	MSHDPRVNIAWLRFEDYDPSVVISEEVDFGLRELGPADRHLVGLEYWQASKRLPSDLLAMLPAPPVGVTS
Ga0255363_100008	Ga0255363_10000871	F066284	MRADYDSTANAISIVFSDMAVADASDELHPRAVVALRRGKPVELQVLYPDLGVAEPIAAAASRYELDREAIEAAAQSALAAPNRLVTVDVQPRVAA
Ga0255363_100180	Ga0255363_1001809	F044388	VANVPSMRIDGHYDLKSDIAWLRFEDYDPSVVISEEADFGLRELDPANRHLVGLEYWQASKRLPSDLLAMLPAPSVGVAS
Ga0255363_101178	Ga0255363_1011781	F078013	MTRGIERDDCNIDNVDELHAMRDEALTNVKAPPPSEYDIAQFKEAFADNEEDSDYDRQERNAKQRALIWYSDTLYSASELLVIMPKVVPDYHEFDGSKTIQLLTSMYPEAYFLPGREYGVAIFIYPPNGTTALKKPNEIEMERLKANSYTIHVTQREGELIHVIELWFDXAEKLXHVEANATPLLMEK
Ga0255363_102595	Ga0255363_1025951	F078013	MTRGIERDDCNIDNVDELHAMRDEALTNVKAPPPSEYDIAQFKEAFADNEEDSDYDRQERNVKQRALIWYSDTLYSASELLVIMPKVAPDYNEFDGSKTIQLLTSMYPEAYFLPSREYGVAIFIYPPNGTTALKKPNEIEMERLKANSYTIHVTQREGELIHVIELWFD
Ga0255363_104477	Ga0255363_1044771	F002998	MSVSTNRVWRQLSNEIRVAVCQVFWAECKGPEKQFMIASLAKTKNLREVFVRKSSTERLVNWTAATLALPDPMVDDLLKRYLLHTHRAVIIHFLDLLNIPHSEGMIEEDFDYATLTTEGVQAAARSLLASPDHIGAELYLQY