3300026245: Upper troposphere microbial communities from Midwestern USA - DC3-135 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026245
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085212 | Ga0209764
• Sample Name: Upper troposphere microbial communities from Midwestern USA - DC3-135 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20963683
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: Midwestern USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010914	Metagenome / Metatranscriptome	297	Y
F032274	Metagenome / Metatranscriptome	180	Y
F043390	Metagenome / Metatranscriptome	156	N
F054846	Metagenome / Metatranscriptome	139	N
F058147	Metagenome	135	Y
F077283	Metagenome / Metatranscriptome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209764_100238	Not Available	863
Ga0209764_100264	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	843
Ga0209764_100310	Not Available	810
Ga0209764_100570	Not Available	666
Ga0209764_100809	Not Available	608
Ga0209764_101110	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331	565

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209764_100238	Ga0209764_1002382	F054846	MSNELNLNDLGLGDNSQSAINEKMPRRGAEGRGQGRESRKSLSEHDTSRKPERVPMYQQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL
Ga0209764_100264	Ga0209764_1002641	F043390	MSYSIKPEALKSIVHLTLTAEQLETISEALELYCIGLSEHDDPHFKHAADAQAAIIDVLECNFSTGDGIIRRLMPIAIN
Ga0209764_100310	Ga0209764_1003101	F010914	MIYNILVEQNGKFVATGETVECEFEETQAVIDELQLEHGCCCAIEAVS
Ga0209764_100570	Ga0209764_1005702	F032274	TEQIEIVKRVRRKPFEARQDWQRAPKIIVTDEYIALDKKLEPIENELFDLIKKMPIAVEKKIKGKICFIETGNKMDESLVNRVRQLRKQASKIGRELDELFFRTNKKWALFYDYIDKT
Ga0209764_100809	Ga0209764_1008093	F058147	LVRKLIKMQRQSIIVFIQGERIETYGNLKKCCELEGLKYHTLARLKFPIRLND
Ga0209764_101110	Ga0209764_1011101	F077283	MNNAEQVAYQNMLRECENSMFGDDVQDDTETTHTRIDAKRESPIAAQMCWVAVPNVVTCRHQVLLCYMDSDDQWRDAGGVLMFRRVSFWQYADVPECDVLC