3300026242: Upper troposphere microbial communities - SEAC4RS-RF9-009 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026242
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085224 | Ga0209352
• Sample Name: Upper troposphere microbial communities - SEAC4RS-RF9-009 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13226479
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Donghicola → Donghicola eburneus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: USA and various oceans
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011936	Metagenome / Metatranscriptome	285	Y
F025488	Metagenome / Metatranscriptome	201	N
F032274	Metagenome / Metatranscriptome	180	Y
F045749	Metagenome / Metatranscriptome	152	Y
F052550	Metagenome	142	Y
F055725	Metagenome / Metatranscriptome	138	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209352_100072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Donghicola → Donghicola eburneus	1196
Ga0209352_100308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri	771
Ga0209352_100377	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	724
Ga0209352_101063	Not Available	550
Ga0209352_101188	Not Available	532

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209352_100072	Ga0209352_1000721	F032274	DFTEQIEIVKHKRHKTLWTPKHDWRVAPKIIVTDEYIALDKKLEPIENELFDLIKQMPLAVEEKIKGKICVVNSGHTVDAELINRVRVLRKEASAIGKQLDELFFRTNKKWALFYDYTDK
Ga0209352_100308	Ga0209352_1003081	F055725	MAFFNGCGINLKTITELAAQGLSLNSMSKMTGHSKNGIKAALERNNIPYTMGIRECFITVDGVLTSLGDACNAQGFSRESMYAWRVKRGLNEQDGFDAYIIYQQSKRTIDKPILTFKNTTVIYKKERYTLDAISDKLKLNKQRFEVFMRHNRYGQN
Ga0209352_100377	Ga0209352_1003771	F052550	MNTTINNNQRVFQAITSTGKQAFCNIKQLNEVVASLDTNEGYFKIYHFWNNKAEKVSKKYLKELFESANLKQEFYY
Ga0209352_100410	Ga0209352_1004101	F025488	QTSLASNLGFTRPMYIPAGNGTATALYDIVKVSTSGSTADTAGVPAGLMGXVRVSDKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSIDTVTGTSGMQISSATLAGSPGMFRLQQRSFAVDNAAIAGTNTKWLVTFNTHQFKATA
Ga0209352_101063	Ga0209352_1010631	F045749	NESELFDYFGGRDEAGEYFENLFRESELHAGAIKTFILNHTISVDFKPSGRAPDTVSRRLMIQASVSPEQSLVEDLINKHECGLVNGRILDVTWFKSLCEGEGDVLPQSRTLAHILNDIGYQQITGRRIKIKKTRENHYIWFKAKKGVDEESVKNEVQDFFGNDLDQVPF
Ga0209352_101188	Ga0209352_1011882	F011936	LLEQLHETRLQKLENGHDMLSRDYSRLNDAIVKISESLMALVVIQEQNKSIMQCMEHQSTTIEKLDARIDAIELQMPQLVESRQWLMIGIGLILSMVVVGLIALVIK