3300026230: Upper troposphere microbial communities from Colorado-Nebraska, USA - DC3-106 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026230
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085201 | Ga0209351
• Sample Name: Upper troposphere microbial communities from Colorado-Nebraska, USA - DC3-106 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38200586
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae → Chlamydiia → Chlamydiales → Chlamydiaceae → Chlamydia/Chlamydophila group → Chlamydia	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: Midwestern USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010914	Metagenome / Metatranscriptome	297	Y
F028669	Metagenome	190	Y
F045749	Metagenome / Metatranscriptome	152	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209351_104802	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae → Chlamydiia → Chlamydiales → Chlamydiaceae → Chlamydia/Chlamydophila group → Chlamydia	666
Ga0209351_106658	Not Available	565
Ga0209351_107631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209351_104802	Ga0209351_1048021	F028669	MYARPEIKKQRFKCWSDQFITNVNKGDEERGGRTLLRIGVRGKGRRATEKIERSK
Ga0209351_106658	Ga0209351_1066581	F045749	FFGGREQTADYFENLFAESEKHAGGIKSFLLNYKISDEFKASGRAPDTSSRQAMIQATISPEQCTVEDLINKNECLIINGRVLDVTWLNELCVIDGDMLPPTRTLGHILSDMGYSQIEGRSVKIQKTRENHYIWFKNVAGVASSDVIEQVRDFFKKGLDEVPF
Ga0209351_107631	Ga0209351_1076312	F010914	MIYNILTEQNGKFVDSGETVECEFEETQAVIDELQLERGCCCALEAVSE