3300026229: Upper troposphere microbial communities from Maryland, USA - DAQMD-024 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026229
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085193 | Ga0209243
• Sample Name: Upper troposphere microbial communities from Maryland, USA - DAQMD-024 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50563251
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: USA: Maryland, Virginia
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019998	Metagenome / Metatranscriptome	226	N
F021533	Metagenome / Metatranscriptome	218	Y
F048174	Metagenome / Metatranscriptome	148	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209243_105409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	781
Ga0209243_107002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	668
Ga0209243_110771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209243_105409	Ga0209243_1054092	F021533	MKTIAATVINEVITPAEPLPTAAKMILFNGTEYLIYEDGDELPVIEYLLNR
Ga0209243_107002	Ga0209243_1070021	F048174	MNDKGQSNNKDVQTGSNIVTGALNGEIARLKDDLDRLHRERDSFQRQCSVMAEEMTDWEAESKRLDWMVKNRGRIEWEFGGNCYVTFIHKNEFKATLGSDDTRVE
Ga0209243_110771	Ga0209243_1107711	F019998	SLSYAASIDAIVVGFTTLVWQPLRIIEARRKDLSSDIEVPLMIVGKFDYERIPNKAMSSIPLWLYAQTMIAETQVFVWPPTAYANWAIGYSFERRYQDVDSGIKSMDFPPEAYESLRYGLAARLGDEFPIDPQRQAMLEQKAAGYFTAMRQASSGNASVKFGVRG