3300026173: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D2_MG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026173
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114514 | Gp0125923 | Ga0209944
• Sample Name: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D2_MG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 304658806
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → wetland area → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4971
  • Long. (^o): -122.133
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005874	Metagenome	387	Y
F014681	Metagenome / Metatranscriptome	261	Y
F029294	Metagenome	189	Y
F050177	Metagenome	145	N
F050310	Metagenome	145	Y
F086685	Metagenome	110	N
F100427	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209944_1013470	Not Available	2589
Ga0209944_1030045	Not Available	1556
Ga0209944_1048962	Not Available	1131
Ga0209944_1056974	Not Available	1021
Ga0209944_1057776	Not Available	1012
Ga0209944_1063036	Not Available	953
Ga0209944_1084524	Not Available	784
Ga0209944_1096651	Not Available	716

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209944_1013470	Ga0209944_10134702	F014681	MNFPTNFLRSLKRDCKGMVDLGVVLMIGIAFVGLMVVAYIVWTIDDQLDATGSAANSLANITGGFDDAVNLLLIAVTITILAIAISALLMLRGRT
Ga0209944_1030045	Ga0209944_10300453	F005874	MVEIPSVPPDDELSPQQLYDRVEQVTNLDADELRAFKQSDYNAAYLEVASDAAQPGDEPLDDVIRLLETPASEYRDVDDGFNEVKEGRELLSFQRRTQAQIESQGLGENYLTDLEVMQVREAASIRWGIDPDDEREWV
Ga0209944_1048962	Ga0209944_10489624	F050310	MANMQSFIIGIVLVGVTLVIGIFISSEIADQMDTGSAEANAANDLVTALSGGSAWITILVVVGFATIVLSMLTSGLGGSADDVGPVY
Ga0209944_1056974	Ga0209944_10569741	F086685	MIELTSIPLVLWAVACAAFVIVGHELTHYIAWLPVATSIEYHFEEQYIEAEYPDTPFARKWAAVAGISPIIVATGLVVALIAIGWDPAASWHHITASAAVVLYGISGGKSD
Ga0209944_1057776	Ga0209944_10577763	F050177	PLTMARIPSDPPDDALTPRQLHDRVDDVVNLSVEELEAFRASEYNEEYLEYNSERAQRGNEPLDDVIRLLETPPDQWRDVDDGFNEIAEARELLDFQRRTQAQIESQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL
Ga0209944_1063036	Ga0209944_10630362	F050310	MANMQSFIIGIVLVGVTLVIGIFISAEIADQMDTGSAEANAANDLVTALSGGSAWITILVVVGFATIVLSMLTSGLGGRSSDVGPVY
Ga0209944_1084524	Ga0209944_10845243	F086685	MIDITTIPLVLWVLGCITFVILGHELTHYIAWLPVASSIEYHFEEQYIEAEYPDTPFARKWAVVAGISPVIVATGLLLALIATGWQPTATWHHITASVAVVLYGISGGKSDFDALFNLVRTLRATS
Ga0209944_1096651	Ga0209944_10966511	F029294	MTQETGETRDAIIEDDQKKLEAILAANKHRRDPYWVVIFAKPSKNSVDGKPTLVKHVKAYGVKPTPQVGMITGEVNNSTGEIKWEVNMPQRPFDFDALQQFGAKPCNEAVIETTSIPGAYITK
Ga0209944_1114529	Ga0209944_11145293	F100427	VPLLVWIPLWALIATIGHELTHYIFWVPIATDIEWDVWGNELEIEHIATPWAMRWAIVASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAVYTFAGGKADYGRLTDAVTTRLA