3300026164: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D1_MG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026164
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114514 | Gp0125922 | Ga0209924
• Sample Name: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D1_MG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 302277617
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Jiulongibacter → Jiulongibacter sediminis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → wetland area → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4971
  • Long. (^o): -122.133
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007787	Metagenome	345	N
F032166	Metagenome	180	Y
F035835	Metagenome / Metatranscriptome	171	Y
F038111	Metagenome	166	N
F050177	Metagenome	145	N
F054750	Metagenome	139	Y
F097996	Metagenome	104	N
F100427	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209924_1052575	All Organisms → cellular organisms → Bacteria	1085
Ga0209924_1059119	Not Available	1003
Ga0209924_1071557	Not Available	879
Ga0209924_1080737	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	808
Ga0209924_1089900	All Organisms → cellular organisms → Bacteria	750
Ga0209924_1143700	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Jiulongibacter → Jiulongibacter sediminis	541
Ga0209924_1147783	Not Available	531
Ga0209924_1155346	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209924_1037109	Ga0209924_10371092	F100427	MTEVPLLVWIPLWALIATVGHELTHYIFWVPIATDIEWDVWGNELEIEHIATPWAMRWAIVASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAIYTFAGGKADYGRLTDAVTTRLA
Ga0209924_1052575	Ga0209924_10525751	F035835	ELEEGLSPDEDRGSRHHHQDRKHRTTMKRKQADPVLGVTHGSLRTMLKSALRPIWRATSRKKFIESVRRHDINPKTGRQWFVVDCVDCGRVMGCSEKERRPLAKGGLSKKERSVFEVDHIDGITPLGDIKETLGPHVHDLLYGKQEIVCYKCHAKRTANQAKERHGK
Ga0209924_1059119	Ga0209924_10591194	F050177	TPRQLYDRFEEVTNLTASELKAFRDSEYNQEYLEGNSDRAQRGNEPLDDVITLLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPDDEREWL
Ga0209924_1071557	Ga0209924_10715571	F032166	LDDVIRLLSTEPAEWRDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDEQREWL
Ga0209924_1080737	Ga0209924_10807372	F007787	MGKTKELAVMLNAESFEEMQFAQDFTKKEAKAKGQELAKTILDNGNANPLEVMATLSRLAEVINTFSETLKKDLNIPENETTLNGVHFKTRQGYPIYDYKQDGMINHYETLLKQRKDLIKQASKTGKPAVDPNNGEEIEGVPIKGYTKDSIVITF
Ga0209924_1089900	Ga0209924_10899002	F054750	MEEIEKLNEYVNQYYKCDRTNGEELLMLQQKISGLLYYFETIRSEQHDAFESKVFELVQEGQSVARAVNEAHVTYPLMYKLRRIMDAGYRIVDAIRTNISYLKSEMNNIKR
Ga0209924_1143700	Ga0209924_11437002	F038111	MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREEFGKDLDKLMDLHQNPLYVLVETDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV
Ga0209924_1147783	Ga0209924_11477831	F097996	MAIIKDGMHPRYLGFQCDWPVFVKIPFSADGKNWKKREHFNWAERDLERKDVASLYAQGLIYHNTELAKENKVGDRLSEMNTEELKSLVTQINAIVKGRTTSSQEYNNKRCKQSKIEDKQRGLIRRFLNRNPWVIEDFYRIRDHIIGD
Ga0209924_1155346	Ga0209924_11553462	F050177	VDDVVNLSVEELEAFRASEYNEEYLEYNSERAQRGNEPLDDVIRLLDTPRDEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL