NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300026101

3300026101: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3819_2500 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026101 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114292 | Gp0127573 | Ga0208817
Sample NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3819_2500 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size61093169
Sequencing Scaffolds41
Novel Protein Genes49
Associated Families47

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available27
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → unclassified Nitrospinaceae → Nitrospinaceae bacterium1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → Viruses → environmental samples → uncultured marine virus2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Epulopiscium → unclassified Epulopiscium → Epulopiscium sp. SCG-B10WGA-EpuloB1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD7-C121

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Atlantic ocean
CoordinatesLat. (o)9.7046Long. (o)-55.3027Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000161Metagenome / Metatranscriptome1845Y
F000226Metagenome1525Y
F000245Metagenome / Metatranscriptome1468Y
F000747Metagenome / Metatranscriptome908Y
F000874Metagenome / Metatranscriptome851Y
F001136Metagenome / Metatranscriptome767Y
F002078Metagenome / Metatranscriptome596Y
F002100Metagenome593Y
F002232Metagenome / Metatranscriptome580Y
F003161Metagenome504N
F003270Metagenome496Y
F003292Metagenome / Metatranscriptome495Y
F004794Metagenome / Metatranscriptome423Y
F005011Metagenome / Metatranscriptome415Y
F005685Metagenome / Metatranscriptome393Y
F010479Metagenome / Metatranscriptome303Y
F010945Metagenome / Metatranscriptome297Y
F013235Metagenome273N
F013236Metagenome / Metatranscriptome273Y
F013420Metagenome271N
F015491Metagenome254Y
F016060Metagenome / Metatranscriptome250Y
F021554Metagenome / Metatranscriptome218N
F024888Metagenome204Y
F026026Metagenome / Metatranscriptome199Y
F030781Metagenome / Metatranscriptome184N
F034205Metagenome175Y
F040340Metagenome / Metatranscriptome162Y
F041246Metagenome160Y
F043989Metagenome155Y
F044553Metagenome / Metatranscriptome154N
F045157Metagenome / Metatranscriptome153Y
F046426Metagenome / Metatranscriptome151Y
F048578Metagenome148Y
F049761Metagenome146Y
F051199Metagenome / Metatranscriptome144N
F052647Metagenome142N
F052649Metagenome142Y
F053346Metagenome141N
F056060Metagenome138Y
F063764Metagenome / Metatranscriptome129Y
F070306Metagenome / Metatranscriptome123Y
F073670Metagenome120N
F075330Metagenome119N
F077781Metagenome / Metatranscriptome117N
F082793Metagenome113N
F089027Metagenome / Metatranscriptome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208817_108725Not Available1187Open in IMG/M
Ga0208817_109874Not Available1044Open in IMG/M
Ga0208817_110089All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → unclassified Nitrospinaceae → Nitrospinaceae bacterium1020Open in IMG/M
Ga0208817_111418Not Available907Open in IMG/M
Ga0208817_111505All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan900Open in IMG/M
Ga0208817_111820Not Available877Open in IMG/M
Ga0208817_111856Not Available874Open in IMG/M
Ga0208817_112345Not Available841Open in IMG/M
Ga0208817_112455Not Available835Open in IMG/M
Ga0208817_112812All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium813Open in IMG/M
Ga0208817_113069Not Available798Open in IMG/M
Ga0208817_114408Not Available729Open in IMG/M
Ga0208817_115179All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon694Open in IMG/M
Ga0208817_115861All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium667Open in IMG/M
Ga0208817_115938All Organisms → Viruses → environmental samples → uncultured marine virus664Open in IMG/M
Ga0208817_116038Not Available660Open in IMG/M
Ga0208817_116738All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Epulopiscium → unclassified Epulopiscium → Epulopiscium sp. SCG-B10WGA-EpuloB635Open in IMG/M
Ga0208817_116930Not Available628Open in IMG/M
Ga0208817_116959Not Available627Open in IMG/M
Ga0208817_117014Not Available625Open in IMG/M
Ga0208817_117101All Organisms → cellular organisms → Bacteria622Open in IMG/M
Ga0208817_117140All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon621Open in IMG/M
Ga0208817_117282Not Available616Open in IMG/M
Ga0208817_117422Not Available612Open in IMG/M
Ga0208817_117424Not Available612Open in IMG/M
Ga0208817_117784All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P601Open in IMG/M
Ga0208817_117810All Organisms → cellular organisms → Bacteria600Open in IMG/M
Ga0208817_117866Not Available598Open in IMG/M
Ga0208817_118130Not Available590Open in IMG/M
Ga0208817_118459All Organisms → Viruses → environmental samples → uncultured marine virus579Open in IMG/M
Ga0208817_118494All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote579Open in IMG/M
Ga0208817_118601Not Available576Open in IMG/M
Ga0208817_119404Not Available555Open in IMG/M
Ga0208817_120000Not Available541Open in IMG/M
Ga0208817_120407Not Available531Open in IMG/M
Ga0208817_120507Not Available529Open in IMG/M
Ga0208817_121138Not Available516Open in IMG/M
Ga0208817_121262All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD7-C12514Open in IMG/M
Ga0208817_121269Not Available514Open in IMG/M
Ga0208817_121388Not Available511Open in IMG/M
Ga0208817_121500Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208817_108725Ga0208817_1087252F082793MAEVIPSKDEIIHAESLALGSSAENLVDAGATIPQNAGDVIVICPSGDSLHWAPSVTPTSSLGRPITLGHPGRIPHTFNKTAKLISDDGNDATCVLIYVRGSSRQDLAYTVAEPF
Ga0208817_108725Ga0208817_1087253F010945VVIRTDCPCGKTNLSSAQMTMHNRSKAHTEWAEANGEVVEAVSEDGALEGILAAARAGEDIRHIAKMARSIFAARGWPNEDHPGSIQDWLESHNIPTINVPPHSDPDEQRKYISEETERFRQAGWGKSWNIT
Ga0208817_109874Ga0208817_1098741F041246MKYVFGVIKRFSYTKSENHTKKGRKHFFCYEFNVESGKFKRVRISTIKAIYYKITFIFGLKAKKVTNVYCKDCKKKYDCIVNFWDRDLDCPNC
Ga0208817_110089Ga0208817_1100891F089027VRRVRRCRILITVTQDAINQMNSILEKKEDAIVRYELRGGGCGGLIAEWKTEPYHEPEQGEMTWDLAHGKFVVDKATTSFIDGGVVNYD
Ga0208817_111418Ga0208817_1114182F003270MARKRRRTKKSKNKHSSIKSMIRKVVNQGAAPLAFWQQLSEKDYTVLNATPEYRGLDYLGKLKVAANILTGSLTGRVAFSDQYNPSPSGQPRINPAGIINKWTGIGIAAKIYGKVGRSMKLPEAASIDRIGSKVIFGGAVGGFFDPPSPAGRISTYAVSPNVRTQNI
Ga0208817_111505Ga0208817_1115051F077781IAAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT
Ga0208817_111820Ga0208817_1118201F030781FTAVYTESQSLTGYGTFSSNDFGNSLPLKVPMQPGAAALGATGTQGIMKLAAYHNTHMPMKTSCKITTAFTNDINQTGTTSFILGVGYTKQ
Ga0208817_111820Ga0208817_1118202F002100MSFRPALIKPVYDVSNFGTGVTLPLNCLSGSTTTLTPSTATFVQVLEDSKVPIDEVDMFITDSDKMAGIYPSNDTDFDTTWHWDVDMSNQAYQITMNFACFMKVSAYTSGNFAIDNVQIIIKQVGGGEGEYVYVNKIIDPGMANMTSATEQVAIINFSTRVSAKVADKPLTFQIKVNTSSGSGTYQTGIVPLFCY
Ga0208817_111856Ga0208817_1118563F043989MVTTFIWNYGLYVIIIWAILQSSCSRGKGNLPYHPPVFVPMYREECYSDNKNFLCMDKEKEASYTSPFLYFLFMSEIK
Ga0208817_112345Ga0208817_1123453F003292MKYLVASLIIGLLFFSVGCDGVKHIIQIEEPLDHTQGDDGGKIKYKIIFGDKSQKE
Ga0208817_112455Ga0208817_1124552F026026NTVRDVHIKDGEIQYVDPKQAEIERLKNIPAVIEGN
Ga0208817_112812Ga0208817_1128122F052649MAVISTYYIDWERDYTAPPWFSRLACSDGSLTVVYSSPNILEEEDA
Ga0208817_113069Ga0208817_1130692F021554MIIEEIPFFAEFVLLGIILGFGYGFTKLFLNHAKDKNKVRRTERKQEKDHNLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELNQARTLQKYEPIIRIIGKPALKKVMSILDRV
Ga0208817_114408Ga0208817_1144081F005685MKKFNEYSSFEDKILATLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMYKEKWQIMKKKN
Ga0208817_114408Ga0208817_1144082F000245MKTFAEAKKGWEKLRNKRDAKYDKYVSDEIKKRKLAKHPVNATDDIKMRMKPNKPAFKFPSPTGSMMIHVYLRKMAPSKGQPKGMMAYNYQLEDK
Ga0208817_115179Ga0208817_1151792F075330MTDPAIIASLIATIAVVVLAMANLIYRFGRLTAQVGNLRRDATRRHDEYLRQSKERYDGIIDRLARLENHFISGAVGDGD
Ga0208817_115861Ga0208817_1158611F010479MIRFKQYLKEFAQRSTSEYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRATVFHTTDLEGLERLKKIEGGKKSISAFFSMMSRYMETGVATSGDVHVVVEMDADVLVSAK
Ga0208817_115938Ga0208817_1159381F016060GENQRAQLNANVTLKEIEGRMRQQLLDFEIKIKELELKYGSNIDELELKRRSMLETEDLKQSGDLMKEIVKGQQQFFNDGQNRNTGQGGKESPGSPKRSPTETGI
Ga0208817_116038Ga0208817_1160381F002100TTLPLNCLSGSTTTLTPSTATFVQVLEDSRVPIDEVDQFITDSDKMELVHAGNDTDADFSWEWTPDMSAQAYQISLNFAVGMKVSAYTSGNFKISDVQVIIKQVGGGEGDFVYLNKIIDPGMTNMAATGEQVAIINFSTTVSAKVFDKPLTFQIKVNTDNATGTYQTGIIPLFCYFGAAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRSGIG
Ga0208817_116738Ga0208817_1167382F056060MTIKKAPLGKTKSIPIPSQNLHIDPRGKTSYRAKGSYIAQGEKVTVKGTGKARKQTATWF
Ga0208817_116930Ga0208817_1169301F052647LVLSHMTQLKKVKRGIEVQKEKKSIENGIDELLENAPQMYSKVLAELQYLKENGADEKQMASLQRKADLLKMAVDNQEIINLAGKPIIKYLGGFLKGIGK
Ga0208817_116959Ga0208817_1169592F053346ASKPEVTKVTVLEKFKEVIDYHKDIGTKWSDKIEIINCDANDYKGSCDFLSIDHYEYDDVLRILDSIKKVCNNITCESAWFWMLEPWIRLGYITDNTENPTIIPKKIRYGGKENDILENYSKIKTYFEHVNLPNLNKEQLTKFIKMY
Ga0208817_117014Ga0208817_1170141F004794MSGAWDIATATSIGTGTSKTQINGGANLTKPTQATNLVEVVPYISSSGAMTAGESLAVTMEIDSFSVDLLPKRIIVPPIQSGLGTTIVQVNPLLEAYECNTGLQEGATSQFRIFGTNQVAPTVATNLACALHYSTTPPNRPE
Ga0208817_117101Ga0208817_1171013F044553MPEQESIHQLQTEIQTLKIKDEFRTKELDALMNKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKV
Ga0208817_117140Ga0208817_1171401F051199MRELETNCPNIKDDHGGKVVFPFGPCIYQNFISDDLRKSLLKEGKSIKDKDRNYNKRLAGNMYFGSSYNYGSEYIAEVFPELFKILIQWFDFMVYHYDGGRINFAPGKEDLDINLDTLWINYQRRY
Ga0208817_117282Ga0208817_1172823F002232MSVKAVKKLRKLKDELDKVHEKEDDLLFKIDEVIDELEDPNED
Ga0208817_117422Ga0208817_1174222F040340VIAVVVLIADARGTLEPTIKAWEKKLGIPVPEEIVKEIEQRNDD
Ga0208817_117424Ga0208817_1174241F003161LSRSGALDRIDVLLSTITDPAFTAVIRAEPLALSGTPILAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGSATVSTIDMGGGLYRTATIPFDIQLYEE
Ga0208817_117658Ga0208817_1176582F073670IAWWSDNKFDEWVSDTVALRLACQQNPSETFFYCVGFDYYHDQTKDGIFLGSSITEFHDENQDSWIGQHKHIEEEYPNSKFIFVGKDMDYGEFENLLNK
Ga0208817_117784Ga0208817_1177842F005011MQKTINKYKSKFDRLMGSIEKDKILKKMPGNATAGIAVQMIKDLKDYLRRNKA
Ga0208817_117810Ga0208817_1178102F045157VVKAGVAKSGLSSGREGIRNKIGQLKKTGHLREAQSALMDMINLKSQQKR
Ga0208817_117866Ga0208817_1178661F049761MTTAIESQYHFTAEVKTKVKQQNRDGWAMVVDWKLPGSKFDLTLYGQDWETVQGFEVGETAIITINQGNLKKDKTGQYSTDYFWDMIGIEATW
Ga0208817_117866Ga0208817_1178662F048578LEQRAYQLMEERGATSIPSETYICEMETGFKYDQVSFGPLKEVFNEVDLKKCLTPAHTDEVKVADKWATVTVKSLAAKYGSEALRIVENAQTESRGRLKFARREVR
Ga0208817_118130Ga0208817_1181304F063764MSESLKYFRQKKGTWIWVYDMETNRRRKMELQLLLNRVNHTLRHENIMYFALEKERDQFREECQS
Ga0208817_118459Ga0208817_1184591F046426MKLKQRFGIGLVCLTFSTGCSFPLVELIPPVFNFALGFYDHNDYYSKECLWYDEIRLNDDTKKWLLESNPPEIVSEDLSKVSRNNDIYKEVC
Ga0208817_118459Ga0208817_1184592F002078MDIAAIFEGQGWFAIAGQIVLVFTAVTGALPDRFVQKIPILGTVWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDEAKAKVRDRSGMPDVLDGM
Ga0208817_118494Ga0208817_1184943F015491MKKTKRQRRAKVPARPQVTPRKWSKKTARIFDKQLDRFLYDELYVSTKKAWGEEIKPYERDMFGDSK
Ga0208817_118601Ga0208817_1186012F024888LMNLDKIDLKNIHKIVGEMVGAIQKKEMKGKTPDEFAQERGFSDWMEYAAWSRHTGGDYHMMEMMLKSKWKEQDPEEFARQKKIQDDQSTREHSYIGILDEEKIKKKNNGHKYYKPVHKSEFSAEELEVIYDERGVGGEPVEYRW
Ga0208817_119404Ga0208817_1194042F000747MKKLLLVLLLVIPLVGSARMFPTEFPVKAVCWDSIKEAVDYHQEMLGEYPVGKGWIDGKDGPSFAVIMFNPTKPSWTFLSFHKNKDGVIVCAVTGGSMWETIHPGDEAEKLEL
Ga0208817_119578Ga0208817_1195783F000226MKDWKEIKALPNHLQPKILSAVAFINSCSPNLDKAVERINRLSKHLSDREMMYVMSLLVFDKIIDMVKDSDEFKSHVSTMKERTVH
Ga0208817_119621Ga0208817_1196212F000226MDKWKEIKALPNYLQPKILSAVAFINSASPNINKAVERIDRLSKHLSDQEMKWVMSLLVFEKLLHMVEDSDEFKNFTSSMKERTVH
Ga0208817_120000Ga0208817_1200001F070306ELTCRVLGRSKLPDEGNDDAYPIVEVWLNTHRDRYVTATASTA
Ga0208817_120407Ga0208817_1204072F000874MILATGTLLTFPTVDNKVYIPNPDCFTQGYKVLEKLATYHGPEEKGKDQGWVLNDSNVQVAGWYCE
Ga0208817_120507Ga0208817_1205072F013235GACKNIQEKSKDRLGLVATRIKEKFKNNKQGWTSKLMTPKGVNTPYNGSYMNSKLGDVKVNNKSLETFYGDKIKP
Ga0208817_121138Ga0208817_1211381F001136MVVDDTINQALNRIADNQEEMIDVLKRIANHYDGVVPVMTRNAKRAEDMADEAERGFGQQVKDLFRPQEH
Ga0208817_121262Ga0208817_1212622F013420MTEPTDIRQVRIPTVAVGLMLSVAVIVGTVTWSSARLVARIDHLEATVSSIEQTMDMNAYARSIDLEDLQITVHALGIALDDLGDMIDDDW
Ga0208817_121269Ga0208817_1212692F013236MEWIQNNWVSIAGAVAVVGGGLYIPFVRGLVITGLKTVVSEAVLKKVAIQVVEKLVKSSKNKLDDIWFAQFKKNVQDA
Ga0208817_121388Ga0208817_1213882F034205MNKNEQQLYRDISNLTKAVQKLVKLIEKMAKQQLXQGN
Ga0208817_121500Ga0208817_1215001F000161EVSHASPAQLTTIGLDLKIMSNGWEKHGPRIKINGQQVQAPKLRIPGSSGKLQAASDKPKKDHNQMI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.