3300026100: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3750_2500 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026100
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0127568 | Ga0208319
• Sample Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3750_2500 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24602321
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteriia bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 8.2514
  • Long. (^o): -49.9993
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008820	Metagenome / Metatranscriptome	327	Y
F011673	Metagenome	288	Y
F018816	Metagenome	233	N
F030781	Metagenome / Metatranscriptome	184	N
F068931	Metagenome / Metatranscriptome	124	Y
F095590	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208319_106424	All Organisms → cellular organisms → Bacteria	718
Ga0208319_107074	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteriia bacterium	674
Ga0208319_109093	Not Available	573
Ga0208319_110236	Not Available	529

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208319_106424	Ga0208319_1064241	F018816	MLNNFASTQGGGTDTVTTTMILDGTIANADVASDAAIDVSKINFGNTLEIETSSGDQIFEMDNNASNSTNFQIQNGAG
Ga0208319_107074	Ga0208319_1070741	F095590	MLASQQVYEDAQYQSSDPIGYQPPIPVGIHDIELSWDRKKGHMRIVIGGERWWFKEYLGKAQVLSCDNKRGRLNLRAMARIDNETLTMYRDPAAPPHEEVEGVRREKTHNRLCYRRQSQEWRL
Ga0208319_107074	Ga0208319_1070742	F008820	MANLTPYLTEKYTKMIAEITADLGKTADDLANAQNIIRALKNPDMMVNGASLSLDMVQIMENGDIRLLPPTPAPITETCVQAPEKNGKKPEKELANVS
Ga0208319_109093	Ga0208319_1090932	F011673	MTSKPSAFKILPIYLQPRILSAVSYIHQSPNKEIGLERINNVSRKLSDREMMYVLSLLVFDNILDMVRDSDEFKNYVSTKRTIN
Ga0208319_110236	Ga0208319_1102361	F068931	MSFRPALIKPVYDVSNFGTGVTLPLNCLSGSTTTLTPSTATFVQVLEDSKVPIDEVDMFITDSDKMAGIYPSNDTDFDYMALGC
Ga0208319_110236	Ga0208319_1102362	F030781	LTGYGTFSSNDFGNSLPLKVPMQPGAAALGATGTQGIMKLAAYHNTHMPMKTSCKITTAFTNDINQTGTTSFILGVGYTKQ