3300025884: Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 2m metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025884
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0138766 | Ga0209206
• Sample Name: Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 2m metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 557887446
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
Not Available	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Oklahoma, Zodletone Spring
• Coordinates
  • Lat. (^o): 34.9956
  • Long. (^o): -98.6889
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030484	Metagenome / Metatranscriptome	185	Y
F066901	Metagenome	126	Y
F083755	Metagenome / Metatranscriptome	112	Y
F087715	Metagenome / Metatranscriptome	110	Y
F092898	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209206_10001586	All Organisms → cellular organisms → Archaea → TACK group	4461
Ga0209206_10101880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	657
Ga0209206_10110792	Not Available	634
Ga0209206_10172376	All Organisms → cellular organisms → Bacteria	525
Ga0209206_10186682	All Organisms → cellular organisms → Bacteria	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209206_10001586	Ga0209206_100015866	F030484	MVDKKEEAIDEAISKMSQIKKAAGDFKENVAGLVKDANIESTDWRFNVESHKEGVTIDIAIKLLITKKEEDLETSN
Ga0209206_10101880	Ga0209206_101018802	F087715	TGAGEGLLSRCPEVIVVTEPPDWPLEQPAEGTLRPWYLTSHGFLVVLFRDPAEARRAEQGLLERQVPAEELRLYESEELQRNLSRLQQERSLLARAVAALVADPDAKRRFLDNARAGGAA
Ga0209206_10110792	Ga0209206_101107922	F066901	MKHPCEPQLAWQICKLLSELDALLWELYWDEFETLYEKEEQDKYWGSTVLSEQEPF
Ga0209206_10172376	Ga0209206_101723761	F092898	MLTNLNDVEFETRTIGPLVLTTPVLRKLGLREIVDRHCPIAEQADMGHGLVAELLVQ
Ga0209206_10186682	Ga0209206_101866821	F083755	DSPQYVPQFEAFCEHARLATLLPLHEVIVIGDRKMPTVENQLAWLRLGVSYIGPVTMQETHRETLRELLKAGQTWRELPYVAQRDAKKQPHARTVYAGVSHTVPLTDPESGRQYPVRHLYIRSSALAKHAAQRRQAEMTAIEREIQRIQTLVNKYDYTTPAIIVQRVQ