NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025833

3300025833: Groundwater microbial communities from aquifer - Crystal Geyser CG12_big_fil_rev_8/21/14_0.65 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025833 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111384 | Gp0110937 | Ga0210009
Sample NameGroundwater microbial communities from aquifer - Crystal Geyser CG12_big_fil_rev_8/21/14_0.65 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size550407140
Sequencing Scaffolds22
Novel Protein Genes24
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina1
Not Available11
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_201
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Gallionellales bacterium RBG_16_57_151
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDevelopment Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomeaquifergroundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001003Metagenome / Metatranscriptome808Y
F014357Metagenome / Metatranscriptome263Y
F021923Metagenome / Metatranscriptome216N
F037060Metagenome / Metatranscriptome168Y
F037574Metagenome / Metatranscriptome167N
F042607Metagenome158Y
F044301Metagenome154N
F047487Metagenome / Metatranscriptome149N
F054576Metagenome / Metatranscriptome139N
F057887Metagenome / Metatranscriptome135N
F057888Metagenome / Metatranscriptome135N
F059646Metagenome133Y
F060595Metagenome / Metatranscriptome132N
F071917Metagenome121Y
F071960Metagenome121N
F075685Metagenome118Y
F083231Metagenome / Metatranscriptome113Y
F091328Metagenome107N
F096615Metagenome / Metatranscriptome104N
F096627Metagenome104N
F102531Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0210009_1000049All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina142528Open in IMG/M
Ga0210009_1033753Not Available2129Open in IMG/M
Ga0210009_1044701All Organisms → cellular organisms → Bacteria1787Open in IMG/M
Ga0210009_1077263All Organisms → Viruses → Predicted Viral1267Open in IMG/M
Ga0210009_1091107All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_201139Open in IMG/M
Ga0210009_1109829Not Available1010Open in IMG/M
Ga0210009_1145907Not Available842Open in IMG/M
Ga0210009_1158008All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Gallionellales bacterium RBG_16_57_15800Open in IMG/M
Ga0210009_1181115All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon732Open in IMG/M
Ga0210009_1191267All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon706Open in IMG/M
Ga0210009_1200403All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense685Open in IMG/M
Ga0210009_1203699Not Available678Open in IMG/M
Ga0210009_1206313All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon673Open in IMG/M
Ga0210009_1224537All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense637Open in IMG/M
Ga0210009_1246046All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense600Open in IMG/M
Ga0210009_1258172Not Available582Open in IMG/M
Ga0210009_1259470Not Available580Open in IMG/M
Ga0210009_1279996Not Available552Open in IMG/M
Ga0210009_1290374Not Available539Open in IMG/M
Ga0210009_1297629Not Available530Open in IMG/M
Ga0210009_1316912Not Available509Open in IMG/M
Ga0210009_1320494Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0210009_1000049Ga0210009_1000049140F083231MASKDGKIFDTIVYIGLGVNGLTAVYLLLMYFEVI
Ga0210009_1033753Ga0210009_10337532F060595KQIKKYYTAFLGFISQKKFNQQFFFNTKTKKALLHEISFLEWTH
Ga0210009_1044701Ga0210009_10447014F091328LRLVVILFIFLYDEGVGRKSVTILVLACLLVGGVAGGVFLYLKHQRTVLSNVAVEKSGDLPMELSVDFDPTVNSPKFMIESVDRKVKTFDLKSVFPPTFEGKRLTSRITCQEIKIVGPGDSVGEEVVYDVLMERMEGVSKEMMIFSGLCSDNTCAEIHQSCRLYLAKVAP
Ga0210009_1077263Ga0210009_10772631F096615RERELNNYLDSADRLDNNDERIKELARDKFNALPNFYSPKGEKYRYTFMDDAMGSLKQEDFIAIARLLRDGEHLQAGKLLEASLMRVLVAEAEEEIEDEEND
Ga0210009_1091107Ga0210009_10911071F060595KQIKKYYTAFLGFISQKKFNQQFFFNTKTKKALLHEISFLEWTHL
Ga0210009_1109829Ga0210009_11098291F075685MSSTTTRTLYDPNTHPVAAAYVDANAAERHAARETWLASDEERGYRFAVYRTVGLRHCDSVPRRRESPHLCRPSELRHRVDLWARAIASALESQTATYWLICHAYPVHPRTGRSDHGLLAEYILAVHPDVPSCIGYLAHDWK
Ga0210009_1145907Ga0210009_11459072F054576MEFQLGLPEIIAFVLANIGGGWALLRLSFAQFELRLDDRFELLDNAMADVKRIELEIVRADTRNAQTYVTQTSHDKVLERIFNVLSSMEQKLDGKANAADCEEKILRHMERK
Ga0210009_1158008Ga0210009_11580082F054576EFQLGLLELIAFAVANIGGGWALLRISFTQFELRIKDQFELLDKAVNDVKRIELEIVRADTRNAQTYVTQANHDKVLERIFNVLSSMEQKLDGKANAADCEAKLLRHMERK
Ga0210009_1181115Ga0210009_11811151F021923MNLTDFFNNYEFIKKLQNHLTVDKENFLNDFPNNNIEKSLNQLLLSPSNAYLSKKIIPQTFADMTWKFKLLEGQQTLTSPSSREFTLTYESQTSRSIFYYETPISGSCYVECDFVDVEPGTTNCIFLGNANNITSKTYLAIQTFPLSSFQGNKIGDGWVAIMEFDNSNIHNPNVLTWSYDIEPTGVFRLSKNTSTLKLHHNRTYSLGAKTTFIGEDLHAGF
Ga0210009_1191267Ga0210009_11912672F059646VESITVAILAICIFLSFYFTFLSFQTIDDALKKQLVTLAASSLITGVIMLACITISLGIKKAFPRVDSKLRSRKEPSEHEG
Ga0210009_1200403Ga0210009_12004032F037574MTGIFADEANEYTTITISKDTAKKLKEFFCGKETYNYVITFLLDYHDEKTYRF
Ga0210009_1203699Ga0210009_12036992F054576MEFQLGLTELIAFVLANIGGGWALLRLSFAQFELRIKDQFKLLDKAVNDVKRIELEIVRADTRNAQTYVTQANHDKVLERIFNVLSSMEQKLDGKANAADCEAKHLRHMER
Ga0210009_1206313Ga0210009_12063131F071917NTRESDIINYGVKKFDYSSEEMKKVIKRMVIKGKIHYIVHSKLEPPEVYISLKELLPPEIVKTLIEAFIQMKAGEEDVQKILDEAASIAEQIKQKHSRK
Ga0210009_1212124Ga0210009_12121241F096627FGWQVERLPAALLQWISSAPSLLRLERIPKDGAAQRIHLFTAGDQGLSLEMDDDTARFVIFQTRRLLQESAVRWLALPAGAKKSTTAHDLPQPITFLPTTWKDSQLASRILKEQGMNTKTAKSTLAWAVSLEWVTALSKVKLEGQRNVVANQFVLCGNAKSIWGGRDEQTKVSFVSMAEKTINATIGEML
Ga0210009_1224537Ga0210009_12245371F001003MEKFKKFKQENKDFLLPCNLSTKEKDIFMYLFRFLRKKIDQGIYPEIYNDEIIYTKPDVKSLCLKEIVLCKKYKKGWVITVNPHNITKNAECGFCGAKFNE
Ga0210009_1246046Ga0210009_12460462F057888QLGTADVIETGIIQNFLGVPFIVSTNCPQYNSGNPDINETGVNWGTAGNTGILISKRKSGQKCSGGIYWKQKGKIDYIQNVEEMLHKFTLIMAFKCTHLQPTSICLIKTSKV
Ga0210009_1246105Ga0210009_12461051F102531KLEAIRQVGSVSVPDYAATPEQIAQLQLADKARTADEILQCPYTWCRHNSTVSDAILESRGYQPYRAAMMMQTTEGLSAGGHQVSAIIVNGEPVFIDLTNNLIIPGQQALEQILLNSGKQLTALEMIRLTTNNVWDVINLIPK
Ga0210009_1258172Ga0210009_12581722F071960EKGLAHHLVEGIHEACQNQGEAEFPEGFQERTGKTVLELLAMPLGEAIPLLKQGDGSPLSRLLPHRAFEGMLLMPRGADTICATCHEHGACRDWVIGAAEDVCLELDLVEPGEILSYIAAKVIEGDYDHNTSITQIAQEFRADVLITTEVRK
Ga0210009_1259470Ga0210009_12594701F057887NEYVFDDLGNAYLVSRPWNPTEPIIFLSIDTEKEYEYNTNTYSFVDKPIVYTAGLGVFKLFSKILKKLKNITSTTRVASVLARIKNIRTGKKILYFNRKRGIWTAARDVSFMSLLYFGLSQGGKVATQTVNIAVSLIGLKMFMNFICEEAIQGAGMGLFIASASDMEAETLSIAIKNYKKVYAIAEDVIQFAD
Ga0210009_1279996Ga0210009_12799962F042607IQLYNKIVASYTNLTNKGEDLFIDLFETDDNGTIIFLKPPSKRQTSFEVFLFLMAVMQQQHIRLMYKQVEDLCAQVNEKLKDK
Ga0210009_1290374Ga0210009_12903741F047487ARPMTTLYGYIAAIVLIVFLGAGWAHEHDKRIVFEAQVEQAGKDAAKHTAETDAKHREEMQNAEQNTIIATNSIADWYRAHPAVRVRYANTDCSAVPSTDNNPSVPDDSTASGYVSPYSPESTEQVASRLDQLQKLLRADGVRVE
Ga0210009_1297629Ga0210009_12976291F044301TFSKGVSAVTKSPAQQAVAQKDAFAKNTIAGKEALIKNLSKVSVEEWKAKTIAGFDKLQAKVVRAVETGKWNAAKTLTAGKNAHAAVANMKKGTLNDSYERYLAAQKAVVAVYA
Ga0210009_1316912Ga0210009_13169121F014357SGSKFTVKNTAFAGMCIVYDIYDAGDINNTMENGKDSKELTFLMYGQPTADVNTATDTQITKKNNPSEFCDFPFRGGVAAKRKIDLYGVVYSSRGADDDIAPSHYIHTNYLKLMKGRNVLFDSMRKGLPAQGKDVPTGSTFSAENGYDVGGEYSDLYQKDALIFDQPIT
Ga0210009_1320494Ga0210009_13204941F037060KFSQMVENDYTLTTQPGNSLIIGIVQNTLELHTTVPDQTGTVANKIELTRMDQVIADKEIKVNNEDWYGAEIAVTFQDAVNARVDKMKLAKYFLQEQLTDIPDKMLAKALQDTSVTQRVYGGDATSVATLQTGDILTPKLFANAMLKIEESGYVPYCFLCSPSQANAI

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