3300025800: Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer E metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025800
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0147100 | Ga0209513
• Sample Name: Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer E metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 246538505
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 37.4127
  • Long. (^o): -118.504
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006925	Metagenome	362	Y
F020112	Metagenome	226	Y
F056992	Metagenome / Metatranscriptome	137	Y
F069685	Metagenome	123	Y
F079345	Metagenome / Metatranscriptome	116	Y
F096529	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209513_1000709	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	15834
Ga0209513_1024574	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1243
Ga0209513_1025515	Not Available	1212
Ga0209513_1026599	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1179
Ga0209513_1032924	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1028
Ga0209513_1080143	Not Available	588
Ga0209513_1086309	Not Available	562

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209513_1000709	Ga0209513_10007098	F056992	MELRSPEELRAFVEIDRTQVVDERAKGGEVILIPLLNPFAPLPALTAVADNLAWFMEQVTGRGYQKAEEVYEVGYVVREPGHQAFGLKVNTEGGMVVISRIAILEDESIFRRYADYLRTGLLF
Ga0209513_1024574	Ga0209513_10245742	F069685	MSEEKQTEDVEVLKARIAELEAENEKLKTTMAEATKTLTAYVEKEKEAAIKSILEKSTLSKDELEKLDLSQLRLVQKGIDSVKGTVKNVRSAGATTGEDENRLTVGCLYHKEK
Ga0209513_1025515	Ga0209513_10255152	F006925	LAVEVSVLENWGREAELRKKWMHMWENLGKRILRMPRWMQEIVLEDINTAIRNRIAIMEMIQNAKGNR
Ga0209513_1026599	Ga0209513_10265992	F079345	MFPLALGLELDGLSVLQRKLLLEVLHRYPQYWSRFASPRYGWQSQKETLEEFLQNHGTELVKEFAKAGLHDNGWKTARRSGVHVQG
Ga0209513_1032924	Ga0209513_10329241	F020112	MAKKTTKTRIKGEKEMVSKAFRKCVELAEEMLSRGYRLQIPSTEVERLIKIGIGADKRTVQKYMRMLIEDLAFLKTVTKNPFGIVIYRIDIEAIEQFVNEHLKEKLRQMKLSDIRLKQNSIEKE
Ga0209513_1080143	Ga0209513_10801432	F096529	MNRKQFIDGFEPQIVRISGKPKVVGYIKDGVFRSVVQYSKHVLHKREARPPAIAKETWIYQNIIRPKCRLWEVFDEERNVILRTTIASFDAHCEEWQWDTPQLLLEEPYWQVEILGPPKPAQARLF
Ga0209513_1086309	Ga0209513_10863091	F006925	MAVEVSILENFGREAELRKKWLQMWEKLGIRILKLPKWMQEIILEDVNTAIRNRLAIMEMIQNAKRNR