3300025765: Groundwater microbial communities from Devils Hole, Nevada to study Microbial Dark Matter (Phase II) - Devils Hole (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025765
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0134299 | Ga0209708
• Sample Name: Groundwater microbial communities from Devils Hole, Nevada to study Microbial Dark Matter (Phase II) - Devils Hole (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44988848
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → cave → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Devils Hole, Nevada
• Coordinates
  • Lat. (^o): 36.43
  • Long. (^o): -116.29
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026254	Metagenome	198	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209708_100063	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	42519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209708_100063	Ga0209708_1000634	F026254	MNTVIQFSVSEETKALPILLRHSRGTILPDRTYVVTEDAARALRQAGIRFSVLSRESVAPSIQGAGSSERV