NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025710

3300025710: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025710 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0110114 | Gp0088366 | Ga0207791
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size460322598
Sequencing Scaffolds43
Novel Protein Genes44
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available41
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002798Metagenome529Y
F010514Metagenome302Y
F031319Metagenome182Y
F038929Metagenome / Metatranscriptome164Y
F105011Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207791_1014759Not Available2270Open in IMG/M
Ga0207791_1025027Not Available1773Open in IMG/M
Ga0207791_1049926Not Available1264Open in IMG/M
Ga0207791_1056866Not Available1184Open in IMG/M
Ga0207791_1058899Not Available1163Open in IMG/M
Ga0207791_1067000Not Available1088Open in IMG/M
Ga0207791_1070504Not Available1059Open in IMG/M
Ga0207791_1071423Not Available1052Open in IMG/M
Ga0207791_1073736Not Available1035Open in IMG/M
Ga0207791_1079609Not Available994Open in IMG/M
Ga0207791_1099072Not Available883Open in IMG/M
Ga0207791_1107774Not Available843Open in IMG/M
Ga0207791_1108226Not Available841Open in IMG/M
Ga0207791_1112043Not Available825Open in IMG/M
Ga0207791_1112285Not Available824Open in IMG/M
Ga0207791_1119100Not Available797Open in IMG/M
Ga0207791_1119940Not Available794Open in IMG/M
Ga0207791_1121043Not Available790Open in IMG/M
Ga0207791_1127987Not Available765Open in IMG/M
Ga0207791_1130807Not Available756Open in IMG/M
Ga0207791_1133247Not Available748Open in IMG/M
Ga0207791_1136581Not Available737Open in IMG/M
Ga0207791_1144992Not Available712Open in IMG/M
Ga0207791_1157111Not Available680Open in IMG/M
Ga0207791_1157945Not Available678Open in IMG/M
Ga0207791_1163036All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus666Open in IMG/M
Ga0207791_1164105Not Available663Open in IMG/M
Ga0207791_1165850Not Available659Open in IMG/M
Ga0207791_1168318Not Available654Open in IMG/M
Ga0207791_1170920Not Available648Open in IMG/M
Ga0207791_1184576Not Available619Open in IMG/M
Ga0207791_1190235Not Available608Open in IMG/M
Ga0207791_1191879Not Available605Open in IMG/M
Ga0207791_1197244Not Available595Open in IMG/M
Ga0207791_1200687Not Available589Open in IMG/M
Ga0207791_1204717Not Available582Open in IMG/M
Ga0207791_1212680Not Available569Open in IMG/M
Ga0207791_1212995Not Available568Open in IMG/M
Ga0207791_1216069All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus563Open in IMG/M
Ga0207791_1243799Not Available523Open in IMG/M
Ga0207791_1250999Not Available514Open in IMG/M
Ga0207791_1252600Not Available512Open in IMG/M
Ga0207791_1260131Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207791_1014759Ga0207791_10147591F010514KRDEVGRKSEYKILVPNSVHIRTEQENFKKNIKKIQKIIKPLPGIIFSKNGMR
Ga0207791_1025027Ga0207791_10250271F010514VHTRLGQENSEKNSKKIQKIKIPLSGIIFCQNGMR
Ga0207791_1049926Ga0207791_10499261F038929MKRVRTGGKIENKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFIS
Ga0207791_1056866Ga0207791_10568661F038929MKRVRTGQKIKNKNNFIPNRSNPTRVRKLKKNCKKIVKIKKHHPGFISVXNGPGKAEK
Ga0207791_1058899Ga0207791_10588991F038929MMKRVRTSQKIEKKKIFFPIRSNPTRVTKFKNKCKKILKIKQHHPGYISRGNGSGQAEK
Ga0207791_1058995Ga0207791_10589951F038929QKIEKKKIFIPIRSNPTRVTKFKNKCKKILKIKKHHPGFISRRNGSGQAEK
Ga0207791_1067000Ga0207791_10670001F010514VPNSVHTRPGQENSENNSKKIQKIIKPIPGIISSQNKKI
Ga0207791_1070504Ga0207791_10705041F010514RKRENKILVPNSVHTRPGKKNSEKNSKKIQKIVKPILGIIFSKNGMRYAEKEKTKF
Ga0207791_1071423Ga0207791_10714232F038929MKQVRIGRKIEKKKIFIPIRSNPTRVKKFKNKCKKILKIKKYHPGFISRRNGSGQAA
Ga0207791_1073736Ga0207791_10737361F010514WDRPKKPKKNLVPNSVHTRPGQENSEKNIKKFQKIIKPLPGTIFSQNGMR
Ga0207791_1079609Ga0207791_10796091F010514DEIGRKSENNILVPNSVHTRPGQENSENNSKKIQKIIKPIPDIIFTQNGKI
Ga0207791_1099072Ga0207791_10990723F002798IKDGLSKESLDNILSTLETHPSGYVHIAIHELWDIFLKEHERYSLGNLTLKDPVCQFIRKLDGKPIPDP
Ga0207791_1107774Ga0207791_11077741F010514RDDIGEKSENKILVPNSVHTRPRQENFEKISKKIQKIIKPISGIIFSPNGKI
Ga0207791_1108226Ga0207791_11082262F010514PKRDEIGRKSENEILHQNLVHTRPGQKNSEKNSKKIQKYIKPLPSIIFSQNRTR
Ga0207791_1112043Ga0207791_11120431F010514IGRKRENKIFVPNSVHTRPGKQNSEKTSKKIQKIIKPIPGIIFSQNGTR
Ga0207791_1112285Ga0207791_11122851F038929MKRVRTGRKIENKKNFLRIRSNPTRVREFKNKCKKILQIKKHHPD
Ga0207791_1119100Ga0207791_11191001F010514RKREIKILVPNSIRTRLGQENSEKNSKKIQKIIKPLSGIIFSQNGMR
Ga0207791_1119940Ga0207791_11199401F010514EIGQKSENKILHQNSVHTRPEQENSEQNSKKIQKIIKPIAGIIFSENGMR
Ga0207791_1121043Ga0207791_11210431F010514RVEICRKGENKILVPNSVHTRPGKENSEKNSKKIQKIIKPLPGNIFRQNGMR
Ga0207791_1127987Ga0207791_11279871F010514MVGRKSEYKILVPNFVHTRTEQENSEKNIKKIQKIIKPLPGIIFSQNGMR
Ga0207791_1130807Ga0207791_11308071F010514KILVPNFVHTRPGQENSEKNSKKIQKIIKPLPGIIFSQNGMR
Ga0207791_1133247Ga0207791_11332471F010514QKRDEIGRKCENTILVLNSVHPRPGQENSEKNSKNFQKIIKPLPGIIFSQNGMR
Ga0207791_1136581Ga0207791_11365812F038929MKRVRTSQKIEKKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFISR
Ga0207791_1144992Ga0207791_11449921F010514ENKILLQNSVHIRIGQENSEKNSKKIQKIIKPLPDIIFRQKGRR
Ga0207791_1157111Ga0207791_11571111F010514ILVPDPVLTRPGQENSEKNNKKIQKIIKPLPGIISSQNGIR
Ga0207791_1157945Ga0207791_11579451F038929MKRVKTGRKIEEKKNFIPIRSNPTRVIKFKNKCKKILKIIKHHP
Ga0207791_1163036Ga0207791_11630362F031319LDSLLSLSMREGETLKAYSDRYWEMYNEIEGNFDDFPIRTFKSGLPTKHGLRNSLTGKPVTSLHQLMDRIDKYKR
Ga0207791_1164105Ga0207791_11641051F038929MTIRARIGRKIGNKNNFLPNRSNPARVRKFENKCKKILKIKKHHPGFITRRNGSGQG
Ga0207791_1165850Ga0207791_11658501F038929VKRVRTGRKIENKKNFIPIRLNPSRVTKLKNDGKKILKIKKHHPGFISRQNGS
Ga0207791_1168318Ga0207791_11683181F038929MLHFRKKRVRTGRIENEKNFLPIRSKPTRVRKFKNKCKKILKIEKHHQ
Ga0207791_1170920Ga0207791_11709201F010514GQKSENKILPQNSVHTRPEQENSEKNSKKIQKIIKPIAGIIFSENRMR
Ga0207791_1184576Ga0207791_11845761F010514GRKSENKILVPNSVHTRPGQENSEKNSKKIQKIIKPLPGFIFSQNGMR
Ga0207791_1190235Ga0207791_11902351F010514EKRENKILVPNSVHTQPRQENSEKNIKKIQKIIKPLPKIIFSKNGMRQAEKVCTKF
Ga0207791_1191879Ga0207791_11918792F010514VPNSVHTRLGQENSEKNSKQIQKIIKPLPGIIFSQNEMR
Ga0207791_1197244Ga0207791_11972441F010514ETKILVPNFVHNRTGQENYEKNCKKIQKIIKPIPGVISSPNGIIYAEKEKSKF
Ga0207791_1200687Ga0207791_12006872F038929RLNFNMKRVRIGRKIEKKKNFILIRSNPTRVKKFKNKCKKILKIIKHHPGFISIRNESGQAKK
Ga0207791_1204717Ga0207791_12047171F010514TKREEIGRKSEHKILLQNHVNTRPGQENFEKNSKKIQIIIKPIPGIFFRQNGTR
Ga0207791_1212680Ga0207791_12126801F105011MKWELKIADVVDDNEIKMEAMRLDHKIKMNAMRLKLKKFRKYVISQEAWYHYAVGSIITLVAILIAFVVGLKFFS
Ga0207791_1212995Ga0207791_12129951F010514EINRKSGNKILPQNSVHTRPEQENSEKNSKEIQKIIKPIAGIIFSENRMR
Ga0207791_1216069Ga0207791_12160691F031319LLERLDLTLLHVAGLPRPLDSLLSLSMKEGETLKRYLDRYWEMFNEIDGDYNDVAIRTFKVGLPVECGLRKSLTGKPATSVRQLMDRIDKYKRVEKDQ
Ga0207791_1243799Ga0207791_12437992F038929SKNYKTSSGLHFKTKRVRTGRKLENKKNFIPIPSNPTQVRKFKNKYKKIVKITKHHPGFISRRGRSGQAEK
Ga0207791_1250999Ga0207791_12509991F038929MMIRVRKDRKIENKKNFIPIRSISTRVRKFKNKCKKVLKIKKHHPG
Ga0207791_1252600Ga0207791_12526001F010514ENYFLPKQDEIGQKRENKILVLNSILSRPGQENSEKNSKKIQKIIKPLPGIVFSQNGMQ
Ga0207791_1260131Ga0207791_12601311F038929VKTDREIENKNNLLPIRSNKTRVRKFKNKCKKILKIKKHHPGFISRRNGSGQAENREQKK

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