Sample 3300025710

Basic Information
IMG/M Taxon OID	3300025710 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110114 \| Gp0088366 \| Ga0207791
Sample Name	High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300025710 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0110114 | Gp0088366 | Ga0207791

Sample Name

High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	460322598
Sequencing Scaffolds	43
Novel Protein Genes	44
Associated Families	5

Dataset Contents

Total Genome Size

460322598

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	41
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus

Ecosystem Assignment (GOLD)
Name	Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
Type	Engineered
Taxonomy	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Ecosystem Assignment (GOLD)

Name

Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Type

Engineered

Taxonomy

Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Joint BioEnergy Institute, California, USA
Coordinates	Lat. (^o)	38.5402	Long. (^o)	-121.75	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Joint BioEnergy Institute, California, USA

Coordinates

Lat. (^o)

38.5402

Long. (^o)

-121.75

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002798	Metagenome	529	Y
F010514	Metagenome	302	Y
F031319	Metagenome	182	Y
F038929	Metagenome / Metatranscriptome	164	Y
F105011	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207791_1014759	Not Available	2270	Open in IMG/M
Ga0207791_1025027	Not Available	1773	Open in IMG/M
Ga0207791_1049926	Not Available	1264	Open in IMG/M
Ga0207791_1056866	Not Available	1184	Open in IMG/M
Ga0207791_1058899	Not Available	1163	Open in IMG/M
Ga0207791_1067000	Not Available	1088	Open in IMG/M
Ga0207791_1070504	Not Available	1059	Open in IMG/M
Ga0207791_1071423	Not Available	1052	Open in IMG/M
Ga0207791_1073736	Not Available	1035	Open in IMG/M
Ga0207791_1079609	Not Available	994	Open in IMG/M
Ga0207791_1099072	Not Available	883	Open in IMG/M
Ga0207791_1107774	Not Available	843	Open in IMG/M
Ga0207791_1108226	Not Available	841	Open in IMG/M
Ga0207791_1112043	Not Available	825	Open in IMG/M
Ga0207791_1112285	Not Available	824	Open in IMG/M
Ga0207791_1119100	Not Available	797	Open in IMG/M
Ga0207791_1119940	Not Available	794	Open in IMG/M
Ga0207791_1121043	Not Available	790	Open in IMG/M
Ga0207791_1127987	Not Available	765	Open in IMG/M
Ga0207791_1130807	Not Available	756	Open in IMG/M
Ga0207791_1133247	Not Available	748	Open in IMG/M
Ga0207791_1136581	Not Available	737	Open in IMG/M
Ga0207791_1144992	Not Available	712	Open in IMG/M
Ga0207791_1157111	Not Available	680	Open in IMG/M
Ga0207791_1157945	Not Available	678	Open in IMG/M
Ga0207791_1163036	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	666	Open in IMG/M
Ga0207791_1164105	Not Available	663	Open in IMG/M
Ga0207791_1165850	Not Available	659	Open in IMG/M
Ga0207791_1168318	Not Available	654	Open in IMG/M
Ga0207791_1170920	Not Available	648	Open in IMG/M
Ga0207791_1184576	Not Available	619	Open in IMG/M
Ga0207791_1190235	Not Available	608	Open in IMG/M
Ga0207791_1191879	Not Available	605	Open in IMG/M
Ga0207791_1197244	Not Available	595	Open in IMG/M
Ga0207791_1200687	Not Available	589	Open in IMG/M
Ga0207791_1204717	Not Available	582	Open in IMG/M
Ga0207791_1212680	Not Available	569	Open in IMG/M
Ga0207791_1212995	Not Available	568	Open in IMG/M
Ga0207791_1216069	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	563	Open in IMG/M
Ga0207791_1243799	Not Available	523	Open in IMG/M
Ga0207791_1250999	Not Available	514	Open in IMG/M
Ga0207791_1252600	Not Available	512	Open in IMG/M
Ga0207791_1260131	Not Available	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207791_1014759	Ga0207791_10147591	F010514	KRDEVGRKSEYKILVPNSVHIRTEQENFKKNIKKIQKIIKPLPGIIFSKNGMR
Ga0207791_1025027	Ga0207791_10250271	F010514	VHTRLGQENSEKNSKKIQKIKIPLSGIIFCQNGMR
Ga0207791_1049926	Ga0207791_10499261	F038929	MKRVRTGGKIENKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFIS
Ga0207791_1056866	Ga0207791_10568661	F038929	MKRVRTGQKIKNKNNFIPNRSNPTRVRKLKKNCKKIVKIKKHHPGFISVXNGPGKAEK
Ga0207791_1058899	Ga0207791_10588991	F038929	MMKRVRTSQKIEKKKIFFPIRSNPTRVTKFKNKCKKILKIKQHHPGYISRGNGSGQAEK
Ga0207791_1058995	Ga0207791_10589951	F038929	QKIEKKKIFIPIRSNPTRVTKFKNKCKKILKIKKHHPGFISRRNGSGQAEK
Ga0207791_1067000	Ga0207791_10670001	F010514	VPNSVHTRPGQENSENNSKKIQKIIKPIPGIISSQNKKI
Ga0207791_1070504	Ga0207791_10705041	F010514	RKRENKILVPNSVHTRPGKKNSEKNSKKIQKIVKPILGIIFSKNGMRYAEKEKTKF
Ga0207791_1071423	Ga0207791_10714232	F038929	MKQVRIGRKIEKKKIFIPIRSNPTRVKKFKNKCKKILKIKKYHPGFISRRNGSGQAA
Ga0207791_1073736	Ga0207791_10737361	F010514	WDRPKKPKKNLVPNSVHTRPGQENSEKNIKKFQKIIKPLPGTIFSQNGMR
Ga0207791_1079609	Ga0207791_10796091	F010514	DEIGRKSENNILVPNSVHTRPGQENSENNSKKIQKIIKPIPDIIFTQNGKI
Ga0207791_1099072	Ga0207791_10990723	F002798	IKDGLSKESLDNILSTLETHPSGYVHIAIHELWDIFLKEHERYSLGNLTLKDPVCQFIRKLDGKPIPDP
Ga0207791_1107774	Ga0207791_11077741	F010514	RDDIGEKSENKILVPNSVHTRPRQENFEKISKKIQKIIKPISGIIFSPNGKI
Ga0207791_1108226	Ga0207791_11082262	F010514	PKRDEIGRKSENEILHQNLVHTRPGQKNSEKNSKKIQKYIKPLPSIIFSQNRTR
Ga0207791_1112043	Ga0207791_11120431	F010514	IGRKRENKIFVPNSVHTRPGKQNSEKTSKKIQKIIKPIPGIIFSQNGTR
Ga0207791_1112285	Ga0207791_11122851	F038929	MKRVRTGRKIENKKNFLRIRSNPTRVREFKNKCKKILQIKKHHPD
Ga0207791_1119100	Ga0207791_11191001	F010514	RKREIKILVPNSIRTRLGQENSEKNSKKIQKIIKPLSGIIFSQNGMR
Ga0207791_1119940	Ga0207791_11199401	F010514	EIGQKSENKILHQNSVHTRPEQENSEQNSKKIQKIIKPIAGIIFSENGMR
Ga0207791_1121043	Ga0207791_11210431	F010514	RVEICRKGENKILVPNSVHTRPGKENSEKNSKKIQKIIKPLPGNIFRQNGMR
Ga0207791_1127987	Ga0207791_11279871	F010514	MVGRKSEYKILVPNFVHTRTEQENSEKNIKKIQKIIKPLPGIIFSQNGMR
Ga0207791_1130807	Ga0207791_11308071	F010514	KILVPNFVHTRPGQENSEKNSKKIQKIIKPLPGIIFSQNGMR
Ga0207791_1133247	Ga0207791_11332471	F010514	QKRDEIGRKCENTILVLNSVHPRPGQENSEKNSKNFQKIIKPLPGIIFSQNGMR
Ga0207791_1136581	Ga0207791_11365812	F038929	MKRVRTSQKIEKKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFISR
Ga0207791_1144992	Ga0207791_11449921	F010514	ENKILLQNSVHIRIGQENSEKNSKKIQKIIKPLPDIIFRQKGRR
Ga0207791_1157111	Ga0207791_11571111	F010514	ILVPDPVLTRPGQENSEKNNKKIQKIIKPLPGIISSQNGIR
Ga0207791_1157945	Ga0207791_11579451	F038929	MKRVKTGRKIEEKKNFIPIRSNPTRVIKFKNKCKKILKIIKHHP
Ga0207791_1163036	Ga0207791_11630362	F031319	LDSLLSLSMREGETLKAYSDRYWEMYNEIEGNFDDFPIRTFKSGLPTKHGLRNSLTGKPVTSLHQLMDRIDKYKR
Ga0207791_1164105	Ga0207791_11641051	F038929	MTIRARIGRKIGNKNNFLPNRSNPARVRKFENKCKKILKIKKHHPGFITRRNGSGQG
Ga0207791_1165850	Ga0207791_11658501	F038929	VKRVRTGRKIENKKNFIPIRLNPSRVTKLKNDGKKILKIKKHHPGFISRQNGS
Ga0207791_1168318	Ga0207791_11683181	F038929	MLHFRKKRVRTGRIENEKNFLPIRSKPTRVRKFKNKCKKILKIEKHHQ
Ga0207791_1170920	Ga0207791_11709201	F010514	GQKSENKILPQNSVHTRPEQENSEKNSKKIQKIIKPIAGIIFSENRMR
Ga0207791_1184576	Ga0207791_11845761	F010514	GRKSENKILVPNSVHTRPGQENSEKNSKKIQKIIKPLPGFIFSQNGMR
Ga0207791_1190235	Ga0207791_11902351	F010514	EKRENKILVPNSVHTQPRQENSEKNIKKIQKIIKPLPKIIFSKNGMRQAEKVCTKF
Ga0207791_1191879	Ga0207791_11918792	F010514	VPNSVHTRLGQENSEKNSKQIQKIIKPLPGIIFSQNEMR
Ga0207791_1197244	Ga0207791_11972441	F010514	ETKILVPNFVHNRTGQENYEKNCKKIQKIIKPIPGVISSPNGIIYAEKEKSKF
Ga0207791_1200687	Ga0207791_12006872	F038929	RLNFNMKRVRIGRKIEKKKNFILIRSNPTRVKKFKNKCKKILKIIKHHPGFISIRNESGQAKK
Ga0207791_1204717	Ga0207791_12047171	F010514	TKREEIGRKSEHKILLQNHVNTRPGQENFEKNSKKIQIIIKPIPGIFFRQNGTR
Ga0207791_1212680	Ga0207791_12126801	F105011	MKWELKIADVVDDNEIKMEAMRLDHKIKMNAMRLKLKKFRKYVISQEAWYHYAVGSIITLVAILIAFVVGLKFFS
Ga0207791_1212995	Ga0207791_12129951	F010514	EINRKSGNKILPQNSVHTRPEQENSEKNSKEIQKIIKPIAGIIFSENRMR
Ga0207791_1216069	Ga0207791_12160691	F031319	LLERLDLTLLHVAGLPRPLDSLLSLSMKEGETLKRYLDRYWEMFNEIDGDYNDVAIRTFKVGLPVECGLRKSLTGKPATSVRQLMDRIDKYKRVEKDQ
Ga0207791_1243799	Ga0207791_12437992	F038929	SKNYKTSSGLHFKTKRVRTGRKLENKKNFIPIPSNPTQVRKFKNKYKKIVKITKHHPGFISRRGRSGQAEK
Ga0207791_1250999	Ga0207791_12509991	F038929	MMIRVRKDRKIENKKNFIPIRSISTRVRKFKNKCKKVLKIKKHHPG
Ga0207791_1252600	Ga0207791_12526001	F010514	ENYFLPKQDEIGQKRENKILVLNSILSRPGQENSEKNSKKIQKIIKPLPGIVFSQNGMQ
Ga0207791_1260131	Ga0207791_12601311	F038929	VKTDREIENKNNLLPIRSNKTRVRKFKNKCKKILKIKKHHPGFISRRNGSGQAENREQKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025710: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences