3300025693: Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15C Gulf of Mexico (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025693
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118071 | Gp0127833 | Ga0209826
• Sample Name: Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15C Gulf of Mexico (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 508918847
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine cold seep biome → mesocosm → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 27.37
  • Long. (^o): -90.57
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009040	Metagenome / Metatranscriptome	324	Y
F013095	Metagenome	274	Y
F013190	Metagenome / Metatranscriptome	273	Y
F078841	Metagenome / Metatranscriptome	116	N
F087322	Metagenome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209826_1037697	Not Available	2115
Ga0209826_1163600	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	710
Ga0209826_1198483	All Organisms → cellular organisms → Archaea	607
Ga0209826_1234550	Not Available	527
Ga0209826_1247589	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209826_1037697	Ga0209826_10376972	F013095	MNKMTPIMPIKLPMNSTVSLTSPTRGAQKTAIKKPVTIIGIPIPTVICFDAMLSITAKIVYEVYDET
Ga0209826_1163600	Ga0209826_11636003	F013190	SMRTPNFMSLSQLYFSNAELGQEMSISATWDGSIPLNETPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK
Ga0209826_1198483	Ga0209826_11984831	F078841	RATELKKEVCDERGICSEKIFYRCLSELVKSKRIIKNERSRGNVSYYKPDWGVYENMINIDVIKQGTSTVRILAEVGRHENEVMQLTLLKMAFDNIMGMYASMTLITQQPGKAKTSAIITSTLKNTIPELLEMFSIALEKCGKNRSRILSSLMDYRDGNMGGGWVLENHPDFKK
Ga0209826_1234550	Ga0209826_12345502	F087322	SVCLHALRFGFVLTVLLVLRIIHAGTGDVCFIFLSRRIFLPECLRAAIESQARKALFKLN
Ga0209826_1247589	Ga0209826_12475891	F009040	AAVVKSDGGERCRNVGAMTPSGKVKRGERKRTTAEVSKAD