3300025670: Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15B Gulf of Mexico (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025670
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118071 | Gp0127832 | Ga0209081
• Sample Name: Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15B Gulf of Mexico (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 479676803
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1
Not Available	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine cold seep biome → mesocosm → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 27.37
  • Long. (^o): -90.57
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006552	Metagenome	370	Y
F050430	Metagenome / Metatranscriptome	145	N
F066857	Metagenome / Metatranscriptome	126	N
F101338	Metagenome	102	N
F101886	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209081_1000305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	29653
Ga0209081_1035954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	2106
Ga0209081_1071816	Not Available	1277
Ga0209081_1153123	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	716
Ga0209081_1205676	Not Available	568
Ga0209081_1214042	Not Available	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209081_1000305	Ga0209081_100030526	F101886	MLRNIFITGFCIANITLFILIGIEVAAVTPEQAMLEGMTQRIYASISTIDYIMATLWGVILFTTLTANKEWFLRSAWLYLGFYLCDIHFGHYMGIEMGEPLWIVAPLILAAIQSAFLYWSRKHIDKLTMPIPSQKWHETQGTSL
Ga0209081_1035954	Ga0209081_10359542	F101886	MLKKILIIGFCLFNVAFFIQIGIEVAAVTPEQAMLEGMTQRIYASISTLDYIMAALWGAILYSILTAKKEHFLRASYLYLGFYLCDIHFSHYMSIEMNDPYFTPGALALVVIQAGFLFWAKTRIHAVSFSL
Ga0209081_1071816	Ga0209081_10718163	F050430	MDKKLKENLIVGTKIVGMLFFLIVLITSLVWPGGVD
Ga0209081_1153123	Ga0209081_11531232	F006552	KNNGMAPIDLRYLDLGKKVLIVXENAMNQYPTVWEATPNVEIPLLISPVLKIKSSRINPVANIPKPIPIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPTRLRIISKKNSNYADSVTVLNKV
Ga0209081_1205676	Ga0209081_12056761	F066857	MCRLSCRRLDYLHDWQEKAKRVIDIFLITKGNVQFLDVFCIFQCQQNKGFSHFLDTDSKLTVYRDGVVRPSRKDNILLPVVFD
Ga0209081_1214042	Ga0209081_12140421	F101338	FSLSIAVLGLVARASAVYMPFFKRILCEGIISAVFLRLEIQVFVPYLTLLTLLTGVQ