3300025651: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-8-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025651
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088368 | Ga0207841
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-8-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 397215822
• Sequencing Scaffolds: 34
• Novel Protein Genes: 36
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1
Not Available	32
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus robur	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008251	Metagenome	336	Y
F010514	Metagenome	302	Y
F031319	Metagenome	182	Y
F038929	Metagenome / Metatranscriptome	164	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207841_1039742	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1330
Ga0207841_1053125	Not Available	1144
Ga0207841_1055546	Not Available	1117
Ga0207841_1057111	Not Available	1101
Ga0207841_1062472	Not Available	1049
Ga0207841_1074593	Not Available	953
Ga0207841_1075304	Not Available	948
Ga0207841_1075463	Not Available	947
Ga0207841_1084781	Not Available	888
Ga0207841_1090477	Not Available	856
Ga0207841_1102384	Not Available	797
Ga0207841_1115595	Not Available	742
Ga0207841_1121210	Not Available	721
Ga0207841_1134116	Not Available	678
Ga0207841_1140811	Not Available	658
Ga0207841_1143986	Not Available	649
Ga0207841_1146992	Not Available	641
Ga0207841_1150753	Not Available	631
Ga0207841_1151951	Not Available	628
Ga0207841_1156105	Not Available	618
Ga0207841_1159200	Not Available	610
Ga0207841_1159641	Not Available	609
Ga0207841_1166826	Not Available	593
Ga0207841_1173515	Not Available	578
Ga0207841_1184859	Not Available	555
Ga0207841_1185098	Not Available	555
Ga0207841_1187448	Not Available	550
Ga0207841_1193932	Not Available	538
Ga0207841_1199541	Not Available	528
Ga0207841_1200683	Not Available	526
Ga0207841_1202637	Not Available	523
Ga0207841_1203160	Not Available	522
Ga0207841_1203804	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus robur	521
Ga0207841_1213060	Not Available	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207841_1039742	Ga0207841_10397421	F008251	LKKKKMDDILKNLKKRFPSLPQNSLKKIYQARCERLRLLMIMNIPVDLRWLIEAKVRLTGEFSDSLISYMPGLGKSSFSKKRRAKRLNVCYKCARTTCNTRCRTLGMVSVNREDKIRFIKDGLSKESLDNILSTLETHPSGYVHIAIHELWDIFLKEHERYSLGNLTLKDPVCQFIRKLDGKPIPDP
Ga0207841_1053125	Ga0207841_10531251	F010514	VHTRPGQQNSEKNSKKIQKIIKPLPGIIFSQNGMR
Ga0207841_1055546	Ga0207841_10555461	F010514	SESKIFLQNSVHTRPGQKNSEKNSKEIQKIIKPIPSIIISENGIR
Ga0207841_1057111	Ga0207841_10571111	F010514	NKILVPNSVHTRPGQENFERNSKKIQKIIKPLLGIIFSQNGMI
Ga0207841_1062472	Ga0207841_10624721	F010514	KKNLVPNSVHTRPGQENSEKNSKKIQKIIKPLPGFIFSQNGMR
Ga0207841_1074593	Ga0207841_10745931	F010514	RDEINRKSENKILLQNSVLTRPGQENSEKNSKKIQKNIKPLPGIISSQNGME
Ga0207841_1075304	Ga0207841_10753041	F010514	GQKSESNILVPNSVHTRPGHENSENNSKKIQKIIKPIPDIIFTQNGKI
Ga0207841_1075463	Ga0207841_10754632	F010514	SVHTRLGQENSEKNSKKIQKIKIPLSGIIFCQNGMR
Ga0207841_1084781	Ga0207841_10847812	F010514	MEDIGRKSENKILVPNSVHTRLGQENSEKNSKKIQKIIKPIPDIIFTQNGRYRPKE
Ga0207841_1090477	Ga0207841_10904771	F010514	SFWHYFYPKRDEMGRKKEKKILVPNSVHTRHGQENFEKNSKKIQKIIKPLPDIIFSKNGM
Ga0207841_1102384	Ga0207841_11023841	F010514	EKKNLVPNSVQNRPGQENSEKYSKRIQKIIKPPPCIIFSQNGMR
Ga0207841_1115595	Ga0207841_11155951	F010514	SVHNRPGQENSEKNSKKIQKIIKPIPGSIFSQKGTR
Ga0207841_1121210	Ga0207841_11212102	F010514	PKRDEIGRKRENKIFVPNSVHTRPGKQNSEKTSKKIQKIIKPLPGIIFSQNGTR
Ga0207841_1134116	Ga0207841_11341161	F038929	MKRVRIGLIIEKKKNFIPIRSNPARVKKFKNKCIKFLKIKKHYPGFISRRNGSEQT
Ga0207841_1140811	Ga0207841_11408111	F010514	PKRDEMGRKKENKILVRNSVHTRQVQENSEKNSKKIQKIIKPLPDINFSKNGMR
Ga0207841_1143986	Ga0207841_11439861	F010514	SVHTRPGQENSEKNSKKIQKIIKPLPGIIFSQKGMR
Ga0207841_1146992	Ga0207841_11469921	F038929	MKRVRIGRKIEKKKNFIPIRSNPTRVKKFKNKCKEILKIKKHHPGFMSRRNGSGQ
Ga0207841_1150753	Ga0207841_11507531	F010514	KNLVPNSVQTRSGIENSEKYSKKIKKIIKPLPGIIFSQNGMR
Ga0207841_1151951	Ga0207841_11519511	F010514	IGQKSEIKILVPNSVHTRPGQENSEKNSKKIQKIIKPLPGIVFSQNGMR
Ga0207841_1156105	Ga0207841_11561051	F010514	MGRKKENEILVPNSVHTRNGQENSEKNRKKIQKIIKPLPDVIFSKNGMRLAEKVSTKF
Ga0207841_1159200	Ga0207841_11592001	F038929	MKQVRIGRKIEKKKIFIPIRSNPTRVKKFKNKCKKILKIKKYHPG
Ga0207841_1159641	Ga0207841_11596411	F038929	RIRTGRKIEEKKNFIPIRSNPTRVRKFKNKFKKVLKIKKYHPGFISRGNGSGQAEK
Ga0207841_1166826	Ga0207841_11668261	F010514	PKRDEIRHKSEKKILVPNSVLTRPGQENSEKNCKKIQKITKPLPGIIFIQNGMR
Ga0207841_1173515	Ga0207841_11735152	F010514	PNSVHTRPGQENSEKNSKKIQKISKPLSGFNFSQNRMR
Ga0207841_1184859	Ga0207841_11848591	F010514	EIKILVPNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSQNGTRYAEKDKTKF
Ga0207841_1185098	Ga0207841_11850981	F010514	LPKRDEIGRKRENKILVPNSVHTRPGHENSEKNSKKIQKTIKPLPGIIFSQNG
Ga0207841_1187448	Ga0207841_11874482	F038929	MKLVRTGRKIENKKNFIPTRLNPSRVTKFKNEGKKILKIKKHHPGFIP
Ga0207841_1193932	Ga0207841_11939322	F038929	MKKLVRTGRKIENNKNFIPIRTNPSPVRKFKNKCKKIIKIKKHHPGYISRRNGSGQAKE
Ga0207841_1199541	Ga0207841_11995411	F010514	HTRPGKKNSEKNSKKIQKIVKPILGIIFSKNGMRYAEKEKTKF
Ga0207841_1200683	Ga0207841_12006831	F010514	NSVHTRPGQENSEKYSKKIQKIIKPLPGIIFSQNGIR
Ga0207841_1202637	Ga0207841_12026371	F010514	MSLAKTKKKKILVLNSVHTRPGQENSEKNSNKIQKIKIPLFGIIFCQNWMR
Ga0207841_1202978	Ga0207841_12029781	F010514	KILAPNSVHTRPKQENSKKNSKKIQKIVKPLPGIIFCQNGLR
Ga0207841_1203160	Ga0207841_12031602	F010514	PKRDEIGQEREKKNLVPNSVHTRPGQENSEKHSKKIQKTKKRHFGIIFCQNRNKIGREREKKF
Ga0207841_1203804	Ga0207841_12038041	F031319	MHYGETLKAYSDRYWETYNEMEDNFDDVAIITFENSLPANHGLRKSLTGKPATSMRQLMDRIDKYKQVEEDQLQGRGKEKVIP
Ga0207841_1209216	Ga0207841_12092161	F010514	EKSENKILVPNSVHTRPGQEIFEKNSKKIQKIKKPIHGIIFSPNGKI
Ga0207841_1213060	Ga0207841_12130601	F010514	LAKTGRDSRKRENNILVPNSVHTRSGQENFEKYSKKIQKIIKPLPGIIFTQNGMR