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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025624 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110114 | Gp0088369 | Ga0207842 |
| Sample Name | High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-9-D (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 330499708 |
| Sequencing Scaffolds | 31 |
| Novel Protein Genes | 35 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | 1 |
| Not Available | 28 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Joint BioEnergy Institute, California, USA | |||||||
| Coordinates | Lat. (o) | 38.5402 | Long. (o) | -121.75 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008251 | Metagenome | 336 | Y |
| F010514 | Metagenome | 302 | Y |
| F031319 | Metagenome | 182 | Y |
| F038929 | Metagenome / Metatranscriptome | 164 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207842_1000563 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta | 6915 | Open in IMG/M |
| Ga0207842_1008041 | Not Available | 2477 | Open in IMG/M |
| Ga0207842_1036513 | Not Available | 1241 | Open in IMG/M |
| Ga0207842_1040467 | Not Available | 1178 | Open in IMG/M |
| Ga0207842_1041941 | Not Available | 1157 | Open in IMG/M |
| Ga0207842_1042458 | Not Available | 1150 | Open in IMG/M |
| Ga0207842_1044811 | Not Available | 1118 | Open in IMG/M |
| Ga0207842_1062435 | Not Available | 940 | Open in IMG/M |
| Ga0207842_1065289 | Not Available | 918 | Open in IMG/M |
| Ga0207842_1068614 | Not Available | 894 | Open in IMG/M |
| Ga0207842_1069949 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus | 885 | Open in IMG/M |
| Ga0207842_1077305 | Not Available | 838 | Open in IMG/M |
| Ga0207842_1078170 | Not Available | 833 | Open in IMG/M |
| Ga0207842_1081204 | Not Available | 816 | Open in IMG/M |
| Ga0207842_1084770 | Not Available | 797 | Open in IMG/M |
| Ga0207842_1091496 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus | 764 | Open in IMG/M |
| Ga0207842_1096176 | Not Available | 743 | Open in IMG/M |
| Ga0207842_1110444 | Not Available | 688 | Open in IMG/M |
| Ga0207842_1111677 | Not Available | 684 | Open in IMG/M |
| Ga0207842_1113723 | Not Available | 677 | Open in IMG/M |
| Ga0207842_1114813 | Not Available | 674 | Open in IMG/M |
| Ga0207842_1121990 | Not Available | 651 | Open in IMG/M |
| Ga0207842_1124014 | Not Available | 645 | Open in IMG/M |
| Ga0207842_1124974 | Not Available | 642 | Open in IMG/M |
| Ga0207842_1134486 | Not Available | 616 | Open in IMG/M |
| Ga0207842_1143662 | Not Available | 593 | Open in IMG/M |
| Ga0207842_1156191 | Not Available | 565 | Open in IMG/M |
| Ga0207842_1161562 | Not Available | 554 | Open in IMG/M |
| Ga0207842_1181400 | Not Available | 518 | Open in IMG/M |
| Ga0207842_1187832 | Not Available | 507 | Open in IMG/M |
| Ga0207842_1190450 | Not Available | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207842_1000563 | Ga0207842_10005632 | F008251 | MDDILKNLKKRFPSLPQNSLKKIYQARCERLRLLMIMNIPVDLRWLIEAKVRLTGEFSDSLISYMPGLGKSSFSKKRRAKRLNVCYKCARTTCNTRCRTLGMVSVNREDKIRFIKDGLSKESLDNILSTLETHPSGYVHIAIHELWDIFLKEHERYSLGNLTLKDPVCQFIRKLDGKPIPDP |
| Ga0207842_1008041 | Ga0207842_10080411 | F038929 | RVRTGRKIENEKNFLPIRSNPTRVRKFKNKCKKILKIKKHHPEFISRPYGPG |
| Ga0207842_1036513 | Ga0207842_10365131 | F038929 | RVRTVRKIENEKNFIPIRSNPTRVRKFKNKRKKILKIKKHHPRFITRRNESGQPEK |
| Ga0207842_1040467 | Ga0207842_10404672 | F010514 | RKSEIKILVPNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSQNGMRYAEKEKTKF |
| Ga0207842_1041941 | Ga0207842_10419413 | F038929 | VRTGRKIEKKKNFIPIRLNPTRVKKFKNKYIKILKIKKHYPGFISRRNGSGQAEK |
| Ga0207842_1042458 | Ga0207842_10424582 | F038929 | MQKDSKNYKTSSGLHFKTKRVRTGRKLENKKNFIPIPSNPTQVRKFKNKYKKIVKITKHLSGFISRRGRSGQAEK |
| Ga0207842_1044811 | Ga0207842_10448111 | F010514 | GRKRENKILVPNSVHTRPGQENSEKSSKKIQKIIKPLPRFIFNQKGMR |
| Ga0207842_1062435 | Ga0207842_10624351 | F038929 | RASMGRKIENKNNFFPIRSNQTRVRKLKNKCKKILKIKKRHPGFISRRNGLGQAEK |
| Ga0207842_1065289 | Ga0207842_10652891 | F010514 | KKILVPNSVHTXPGQENSEKYGKKIQKIIKPLFGVIFSKNGMR |
| Ga0207842_1065289 | Ga0207842_10652892 | F010514 | LPKLDEIGQNKENKILALNSVHTRPGQENSEKNSKQIQKIIKPLPGIIFSQNGMR |
| Ga0207842_1068614 | Ga0207842_10686141 | F010514 | KSENKILLQNSVHPRPEQENSEKNSKKIQKIIQPIPGIIFSKNGIR |
| Ga0207842_1069949 | Ga0207842_10699491 | F031319 | WEMYNEIEGKYDDVAISTFKRGLPTEHGLRKSLTGKPVTSVRQLMDRIDKYKRVEEDQ |
| Ga0207842_1077305 | Ga0207842_10773051 | F010514 | RKSEIKILVPNSVHTRPGQENSEKNSKKVQKIIKPLPGIIFSENGMRYAEKEKTKF |
| Ga0207842_1078170 | Ga0207842_10781701 | F010514 | NSVHTRLGQENSEKNSKKIQKIKIPLSGIIFCQNGMR |
| Ga0207842_1081204 | Ga0207842_10812041 | F010514 | RDRPKKRKNILVPYSVHTRPGQENSEKNSKKIQKIIKPLLGFIFSQNGMR |
| Ga0207842_1084770 | Ga0207842_10847702 | F038929 | MQKNFKNLKTSSRLHFMMLRVRKVRKIENKKNFIPIRSNPTRVRKFKNKCKKILKITKYHPGFISRLNGSGQAEK |
| Ga0207842_1091496 | Ga0207842_10914963 | F031319 | LASLLSLSMREGETLKTYSDRYWEMFNEIDGDFEDVAVITFKLGLPVEHGLKKSLTRKPVTSICQLMDQIDKYKRVEEDH |
| Ga0207842_1096176 | Ga0207842_10961761 | F038929 | RVRTVRKIENEKNFIPIRSNPTRVRKFKNKRKKILKIKKHHPGFISRRNESGQAEK |
| Ga0207842_1099486 | Ga0207842_10994861 | F010514 | LQNSVDTRPETENSEKNSKKIQKIVKPIPGIIFSENGMK |
| Ga0207842_1110444 | Ga0207842_11104441 | F010514 | REHKILVPNSVHTRPGQENSEKNSKKIQKIIKPLPGNIFSQNGMR |
| Ga0207842_1111677 | Ga0207842_11116772 | F010514 | EIGQKSENKILVPNSVHTRPTQENFEKIIKPLPGIISSQNGMI |
| Ga0207842_1113723 | Ga0207842_11137231 | F038929 | LSRLHFNMKRVRIGRKIEKKRNFIPIRSNPTRVKKFINKCKKILKIKKHHPGFISRRNGSAQAAK |
| Ga0207842_1114813 | Ga0207842_11148131 | F010514 | RKSENKILVPNSVQTRPGQENSKKNSKKIQKIVKPLPGIISCQNWLR |
| Ga0207842_1121990 | Ga0207842_11219901 | F010514 | RENKILVPNSVHARLGQENSEKNSNKIQKIIKPLPGIIISQNGMR |
| Ga0207842_1124014 | Ga0207842_11240141 | F038929 | MTKRVRTSQKIEKKKIFIPIRSNPTRVTKFKNKCKKILKIKKHHPGFISRLNGSGQTEK |
| Ga0207842_1124014 | Ga0207842_11240142 | F038929 | RLHFKTKRVRAGRKIENKKNFIPIRLNPSRVTKFENLGRKILKIKKHHPGFIS |
| Ga0207842_1124974 | Ga0207842_11249741 | F038929 | KTSSRLHFKTKRVRTDRKIENKNNFLPTRSNPGRVRKFENKCKKILKIKKYHPGFISRPYGPG |
| Ga0207842_1134486 | Ga0207842_11344861 | F010514 | RKSEIKILVPNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSQNGTRYVEKEKTKF |
| Ga0207842_1143662 | Ga0207842_11436621 | F038929 | RVRTGRKIEKKKNFIPIRLNPTRVKKFKNKCKKILKIKKHYPAFILRLNGLGQAKK |
| Ga0207842_1156191 | Ga0207842_11561911 | F038929 | MTKQVKTGQKIENKKTFLPIRSNPTRVRKLKNKCKKILKIKK |
| Ga0207842_1161562 | Ga0207842_11615621 | F010514 | KRDEICRKRENKILVPNSVHTRPGQENFERNSKKIQKIIKPLPGIIFSQNGMR |
| Ga0207842_1173184 | Ga0207842_11731841 | F010514 | SENKILLPNSVHTRPGQENFKKNSKKIQKIIKPIPGIIFSPNGKI |
| Ga0207842_1181400 | Ga0207842_11814001 | F010514 | PNSVHTRPGKKNSEKNSKKIQKIIKPLPGIIFSQNGTRLVDNVNTKF |
| Ga0207842_1187832 | Ga0207842_11878321 | F038929 | RLHFKTKRARTGPKKENKNNFLPIRSNLAQVRKFENKWKIFLKIKKHYPGFISRRNRSGQAEK |
| Ga0207842_1190450 | Ga0207842_11904501 | F010514 | KSENKILVPNSVHTQPGQENSEKISKKILKSLPGIISSHNGMI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |