3300025542: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025542
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088367 | Ga0207767
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 276199444
• Sequencing Scaffolds: 24
• Novel Protein Genes: 26
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1
Not Available	22
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002798	Metagenome	529	Y
F010514	Metagenome	302	Y
F031319	Metagenome	182	Y
F038929	Metagenome / Metatranscriptome	164	Y
F105011	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207767_1016340	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1625
Ga0207767_1026537	Not Available	1284
Ga0207767_1034021	Not Available	1133
Ga0207767_1034597	Not Available	1124
Ga0207767_1042800	Not Available	1006
Ga0207767_1064041	Not Available	814
Ga0207767_1068366	Not Available	786
Ga0207767_1070132	Not Available	775
Ga0207767_1071610	Not Available	766
Ga0207767_1071613	Not Available	766
Ga0207767_1077988	Not Available	731
Ga0207767_1083088	Not Available	706
Ga0207767_1084710	Not Available	698
Ga0207767_1091399	Not Available	669
Ga0207767_1095152	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	654
Ga0207767_1101894	Not Available	629
Ga0207767_1107108	Not Available	611
Ga0207767_1108995	Not Available	605
Ga0207767_1116439	Not Available	582
Ga0207767_1130091	Not Available	545
Ga0207767_1132947	Not Available	538
Ga0207767_1145629	Not Available	509
Ga0207767_1149037	Not Available	502
Ga0207767_1149504	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207767_1016340	Ga0207767_10163401	F002798	FVNREDKIRFIKDGLSKESLDNILSTLETHPSGYVHIAIHELWDIFLKEHERYSLGNLTLKDPVCQFIRKLDGKPIPDP
Ga0207767_1026537	Ga0207767_10265371	F010514	ESKILLQNSVHTRPGQKNSEKNSKEIQKIIKPLPGIIFSENGMR
Ga0207767_1034021	Ga0207767_10340212	F038929	MTIRARIGRKIESKNNFLPTRSNPARVRKFVNKCKKILKIKKHHPGFISRRNGSGQTEKLITK
Ga0207767_1034597	Ga0207767_10345971	F010514	RDEIGQKSENKILVPNSFHTRPGQENSEKISKKIQKIITPLPGLIFTQNGMQ
Ga0207767_1036251	Ga0207767_10362511	F038929	IGRKIEKKKNYVPIRSNPTRVTKFKNNCKKILKIKKHHPGFISR
Ga0207767_1042800	Ga0207767_10428001	F038929	EKKKNFIPIRSNPTRVKKFKNKCIKILKIKKHYPGFISRRNGSGQAAK
Ga0207767_1064041	Ga0207767_10640411	F010514	RDEIGQKTENKILVPNSILTRPGQENSEKNSKKIEKNMNLLPDIISSQNGMI
Ga0207767_1068366	Ga0207767_10683661	F038929	MTKRVRTSQKIEKKKIFIPIRSNPTRVTKFKNKCKKILKIKKYHPG
Ga0207767_1070132	Ga0207767_10701321	F010514	ILVPNSVHTLPGRENSEKNCKKIQKIRKLLPGIISSQIGMI
Ga0207767_1071610	Ga0207767_10716101	F010514	KKVIVPNSVHTRPGQENSEKYSKKIQKIIKPLFGIIFSINGMR
Ga0207767_1071613	Ga0207767_10716131	F010514	KSEKKILVPNSVLTRPGQENSEKNCKKIQKIIKPLPDIIFSQNGMR
Ga0207767_1076131	Ga0207767_10761311	F038929	RKIEKIKNFIPIGSNPTRVRKFKNECKKTLKIKKHHPGYISRRNGSGQAEK
Ga0207767_1077988	Ga0207767_10779881	F010514	SRRYFKSKRHEIGRKRENKILVPNSIHTRPGKENSEKNSKIIQKIIKPIPGIISN
Ga0207767_1083088	Ga0207767_10830881	F105011	VEFLDKENNDLKAKLKRSEDLYLQCLQDKMKLELKLVDVVDGNEIKMDAMRLKLRKIRKYVISQEAWYHYAVGSIINLVAILIAFVVGFKFFR
Ga0207767_1084710	Ga0207767_10847101	F010514	ENKILVPNSVHTRPGQENSEKSSKKIQKIIKPLPRFIFNQKGMR
Ga0207767_1091399	Ga0207767_10913991	F010514	QNGMSLAKTKKKKILVLNSVHTRPGQENSEKNSNKIQKIKIPLFGIIFCQNWMR
Ga0207767_1095152	Ga0207767_10951521	F031319	LLEGETLKAYSDRYWEMYNEIEGNYDDVAISMFKRGLPTEHGLRKSLTGKPVTSVRQLMDRIDKYKRVEEDQ
Ga0207767_1101894	Ga0207767_11018941	F038929	TGRKIENKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFIS
Ga0207767_1107108	Ga0207767_11071081	F010514	KILLQNSVHTRTGQENSENNNKKIQKIIKPLPGIIFRQNEIV
Ga0207767_1108995	Ga0207767_11089951	F010514	EKSENKILVPNSVHTRPGQEIFEKNSKKIQKIKKPIPGIISSPNGKI
Ga0207767_1116439	Ga0207767_11164391	F010514	TSFWHYFYPKRDEMGRKNGNKILVPNSVHTRHGQENSEKNSKKIQKIIKPLPDIIFSKNGMR
Ga0207767_1130091	Ga0207767_11300911	F010514	MEDIGRKSENKILVPNSVHTRLGQENSEKNSKKIQKIIKPIPGIIFSQNGKI
Ga0207767_1132947	Ga0207767_11329471	F010514	EMGQKKENKILVPNSVHTRQVQENSEKNSKKIQKIIKPLPDINFSKNGMR
Ga0207767_1145629	Ga0207767_11456291	F010514	RKSENKILGPNSVQTRPGQENSKKNSKKIPKIVKPLPGIIFCQNGLR
Ga0207767_1149037	Ga0207767_11490371	F010514	KKENKILVPNSVHARPGQENSEKNSKKIQKIIKPLPGIIYSQNEMR
Ga0207767_1149504	Ga0207767_11495041	F010514	LVPNSVHTRPGKQNSEKNSKKIQKIIKPIPGIIFSQNGTRLADKMNTKF