3300025541: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-4-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025541
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088364 | Ga0207790
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-4-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 197191093
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010514	Metagenome	302	Y
F031319	Metagenome	182	Y
F038929	Metagenome / Metatranscriptome	164	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207790_1029416	Not Available	1051
Ga0207790_1036410	Not Available	915
Ga0207790_1038878	Not Available	876
Ga0207790_1052303	Not Available	719
Ga0207790_1052577	Not Available	717
Ga0207790_1064304	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	629
Ga0207790_1075233	Not Available	567
Ga0207790_1078875	Not Available	548
Ga0207790_1083482	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	528
Ga0207790_1090096	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207790_1029416	Ga0207790_10294161	F038929	KTKRVRTGRKIENEKNFIPIRSNPTRVRKFKNTCKKILKIKKHHPGFISRGKRSGQAEK
Ga0207790_1036410	Ga0207790_10364102	F038929	IRARIGRKIENKNNFLPTRSNPARVRKFENKCKKKLKIKKHHPGVISRRNGSRQAENREQ
Ga0207790_1038878	Ga0207790_10388781	F010514	NILVPNSVHTRPGHENFEKYSKKIQKIIKPLLGIIFSQNGMT
Ga0207790_1052303	Ga0207790_10523031	F010514	LAKRDETGQKSENKILVPNSVHTRPKQENSEKNSKNIQKIIKPFPGIVS
Ga0207790_1052577	Ga0207790_10525771	F010514	EKKKVLVPNSVHTRPGQENSEKNSKKFQKISKPLFGIHFSQNGMR
Ga0207790_1064304	Ga0207790_10643041	F031319	AYSDRYWEMYNEIKGNYNDVSINTFKRGLPTEHGLRKSLMGKPNTSLHQLMDRIDKYKRVEED
Ga0207790_1075168	Ga0207790_10751681	F038929	MKRVKTDRKTENKKYFFPLRSNPTRVRKFKNECKKVLKIKKHHPGFISGKN
Ga0207790_1075233	Ga0207790_10752331	F038929	HFKTKRVRTGRKIENKKNLLPIRSNPTRVREFKNKCKKILKIKKHHPGFISRRKGSGQTE
Ga0207790_1078875	Ga0207790_10788751	F010514	LNPVNTRPGQEHSEKIHKKIQKIKKHFSGIIFSQNGMR
Ga0207790_1083482	Ga0207790_10834821	F031319	MYSDRYWEMFNEIDSDFDDVAISTFKVGLPAKHGLRKSLTGKPITSVRQLMGRIDKYKRVEEDQQQGKGKAKVI
Ga0207790_1090096	Ga0207790_10900961	F010514	RDEIGRNREKKNLVPNSVQTRPGQENSEKYSKKFQKIIKPLPCIFFSQNSMR