3300025540: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025540
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088363 | Ga0207748
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 212031595
• Sequencing Scaffolds: 26
• Novel Protein Genes: 29
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	26

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010514	Metagenome	302	Y
F038929	Metagenome / Metatranscriptome	164	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207748_1025596	Not Available	1065
Ga0207748_1025845	Not Available	1060
Ga0207748_1032189	Not Available	949
Ga0207748_1038396	Not Available	866
Ga0207748_1039870	Not Available	849
Ga0207748_1046368	Not Available	784
Ga0207748_1051252	Not Available	743
Ga0207748_1052936	Not Available	730
Ga0207748_1057128	Not Available	702
Ga0207748_1057591	Not Available	699
Ga0207748_1060351	Not Available	682
Ga0207748_1066637	Not Available	647
Ga0207748_1070665	Not Available	627
Ga0207748_1075874	Not Available	603
Ga0207748_1076107	Not Available	602
Ga0207748_1081223	Not Available	581
Ga0207748_1081460	Not Available	580
Ga0207748_1083936	Not Available	571
Ga0207748_1085106	Not Available	566
Ga0207748_1088811	Not Available	553
Ga0207748_1093526	Not Available	537
Ga0207748_1095152	Not Available	532
Ga0207748_1096138	Not Available	529
Ga0207748_1101373	Not Available	513
Ga0207748_1104124	Not Available	505
Ga0207748_1104938	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207748_1004652	Ga0207748_10046522	F010514	VPNSVHARPRQENSEKNSKKIQKTNKPLSGVNFSQNGMR
Ga0207748_1025596	Ga0207748_10255961	F010514	ILVPNYVHTRPGQKKSEKNSKKIQKIIKPLLGIIFSQNGMR
Ga0207748_1025845	Ga0207748_10258452	F010514	MEDIGRKSENKILVPNSVHTRLGQENSEKNSKKIQKIIKPIPGIIFSQNGMR
Ga0207748_1030297	Ga0207748_10302971	F010514	FLPERDEIGGNREKKNLVPNSVQTRPGQENSEKYSKKIQKIIKPLFGIIFSKNGMR
Ga0207748_1032189	Ga0207748_10321891	F038929	GRKIENKNNFLPIRSNMAQVRKFEKKLKKILKIKQRHPGFISRRNGSGQAEK
Ga0207748_1038396	Ga0207748_10383962	F010514	NKIFVPNSVQTRPKQDNSKKNSKKIQKIIKRPPGIISSQNGMR
Ga0207748_1039870	Ga0207748_10398701	F010514	MGRKKENKILVPNSVHTRPEQENSEKKSKKMQKIIKPLPGIIFSQNGT
Ga0207748_1046368	Ga0207748_10463681	F010514	DKIGRKSENKILLQISVHPRPEQENSEKNCKKIQKIIKPIPGIIFSESGMR
Ga0207748_1051252	Ga0207748_10512521	F038929	MKRVSIGRKIETQKNFIPIRSNPTRVTKLKNKCKKILKIKKHHPGF
Ga0207748_1052936	Ga0207748_10529361	F010514	KLDEIGRKRENKILVPNSIHTRPGKENSEKNSKIIPKIIKPIPGIISS
Ga0207748_1057128	Ga0207748_10571281	F010514	GRKRENKILVPNSIHTRPGKENSEKNSKIIQKIIKPIPGIISS
Ga0207748_1057591	Ga0207748_10575911	F010514	PKWYEIGRNREKKIIVPKSVHTRPGKENSEKYSKKIQKFIKPLPGIIFSQHGMS
Ga0207748_1060351	Ga0207748_10603511	F010514	IKILVPNSVHTRPGQENSEKNRKKIQKILKPLLGIIFSQNGMR
Ga0207748_1066637	Ga0207748_10666371	F038929	TGRKIEKKKNFLSIRSNLTRVRKFKNKCKKILKIKKHHPGFISRRNE
Ga0207748_1070665	Ga0207748_10706651	F038929	LHFKTKRVRTGYKIENKNNFIPNRSNPTRVRKFKNKCKKILKIKKHHPGFISRRNGSGQTAK
Ga0207748_1075874	Ga0207748_10758741	F010514	NSVLTRPGQENSEKNSKKIQKIIKPLPGIIFSQNGMQ
Ga0207748_1076107	Ga0207748_10761071	F010514	RENKILVPNSVHTRPGKKNSEKNSKKIQKIVKPILGIIFSKNGMRYAEKEKTKF
Ga0207748_1081223	Ga0207748_10812231	F010514	RDEIGQKSEIKILVPNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSQNGMRYAEKKKTK
Ga0207748_1081460	Ga0207748_10814601	F010514	RPKQRKKKILVLNSVHTRPGQKNSEKNSNKIQKIKIPLFGLIFSQNWMR
Ga0207748_1083936	Ga0207748_10839361	F010514	MVGRKSEYKILVPNFVHTRTEQENSEKNIKKIQKIIKPLPRIIFSQNG
Ga0207748_1085106	Ga0207748_10851061	F010514	DEICQKKENKILVLNFVHARPGQENSEKNSKKIQKIIKPLPGIIYSQNEMR
Ga0207748_1086254	Ga0207748_10862541	F038929	KIENKKNFIPIRSNPTRVRKFKNKYKKILKITKHHPGFISRRNGSGQAEK
Ga0207748_1088811	Ga0207748_10888111	F038929	VKRVKTGRKIENKKNFIPIRLNPSRVTKLKNEGKKILKIKKHHPGFISRQNRSGQAKK
Ga0207748_1093526	Ga0207748_10935261	F010514	IKILVPNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSQNGTRYAEKDKTKF
Ga0207748_1095152	Ga0207748_10951521	F038929	MKRVRIGRKIEKKKNFIPIRSNPTRVTKFKNKCKKILKIKKHHPGFISRGNGSGQAEK
Ga0207748_1096138	Ga0207748_10961381	F038929	MKRVRTGRKIENKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFI
Ga0207748_1101373	Ga0207748_11013731	F010514	RDEIGQKSENKILLQNSVHIRIGQENSEKNSEKIQKIIKPLPGIIFSKNGMR
Ga0207748_1104124	Ga0207748_11041241	F010514	VEICRKGENKILVPNSVHTRPGKENSEKNSKKIQKIIKPLPGNIFRQNGMR
Ga0207748_1104938	Ga0207748_11049381	F038929	RTGQKIENKKNFFPIRSNPTRVRKFKNKWKKILKIEKHHPGFISRRNGSGQTGK