3300025528: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-6-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025528
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0061318 | Ga0207867
• Sample Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-6-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 191876369
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007999	Metagenome	341	Y
F018530	Metagenome / Metatranscriptome	234	Y
F036417	Metagenome / Metatranscriptome	170	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207867_1000424	Not Available	44717
Ga0207867_1019906	All Organisms → cellular organisms → Bacteria	1301
Ga0207867_1031765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	847

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207867_1000424	Ga0207867_100042437	F018530	MIQGLPGVSQTTRDFVQLVRLFLRDFPELNRLIAGVESTDRQIAWAIMDALADFNGTPPFTTFTLDDLLYRNQHNLMLRMTVISILESVAMLQVRNHINYSNGGITVGVNDKAPELMRWLQYFKATTDQMKQRVKVALNIEGILGSSNMGVSSEYWAVNSTYAAY
Ga0207867_1019906	Ga0207867_10199061	F036417	TVLVRLDTDDGVVTFRARWHRSALELQRAILFRLRQGHPLWFEDEWGHSHCFKPERVWGALVDGR
Ga0207867_1031765	Ga0207867_10317653	F007999	ARAARARANLVAALRECCELADAVEAFEGEELLEVLSHLDGLRFVMAESAQILQGVVRGLEAYEK