Sample 3300025520

Overview

Basic Information
IMG/M Taxon OID	3300025520 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053062 \| Gp0055517 \| Ga0208243
Sample Name	Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_QV12A (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	158234301
Sequencing Scaffolds	13
Novel Protein Genes	14
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	4
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → planetary subsurface zone → rock
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: California, McLaughlin Reserve
Coordinates	Lat. (^o)	38.8739528	Long. (^o)	-122.4391613	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F006324	Metagenome	376	Y
F009686	Metagenome / Metatranscriptome	314	Y
F012659	Metagenome / Metatranscriptome	278	Y
F069970	Metagenome	123	Y

Family

Category

Number of Sequences

3D Structure?

F006324

Metagenome

376

F009686

Metagenome / Metatranscriptome

314

F012659

Metagenome / Metatranscriptome

278

F069970

Metagenome

123

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208243_1000040	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	172623	Open in IMG/M
Ga0208243_1000461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	22944	Open in IMG/M
Ga0208243_1004273	Not Available	4151	Open in IMG/M
Ga0208243_1005027	All Organisms → cellular organisms → Bacteria	3779	Open in IMG/M
Ga0208243_1007137	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	3032	Open in IMG/M
Ga0208243_1007263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2995	Open in IMG/M
Ga0208243_1007398	All Organisms → cellular organisms → Bacteria	2963	Open in IMG/M
Ga0208243_1008758	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales	2650	Open in IMG/M
Ga0208243_1013786	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
Ga0208243_1014405	Not Available	1849	Open in IMG/M
Ga0208243_1021490	Not Available	1323	Open in IMG/M
Ga0208243_1026697	Not Available	1089	Open in IMG/M
Ga0208243_1031464	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208243_1000040

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

172623

Open in IMG/M

Ga0208243_1000461

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

22944

Open in IMG/M

Ga0208243_1004273

Not Available

4151

Open in IMG/M

Ga0208243_1005027

All Organisms → cellular organisms → Bacteria

3779

Open in IMG/M

Ga0208243_1007137

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium

3032

Open in IMG/M

Ga0208243_1007263

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

2995

Open in IMG/M

Ga0208243_1007398

All Organisms → cellular organisms → Bacteria

2963

Open in IMG/M

Ga0208243_1008758

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales

2650

Open in IMG/M

Ga0208243_1013786

All Organisms → cellular organisms → Bacteria

1914

Open in IMG/M

Ga0208243_1014405

Not Available

1849

Open in IMG/M

Ga0208243_1021490

Not Available

1323

Open in IMG/M

Ga0208243_1026697

Not Available

1089

Open in IMG/M

Ga0208243_1031464

All Organisms → cellular organisms → Bacteria

940

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208243_1000040	Ga0208243_100004047	F009686	MNERQMFERSFQRPSNYFKLPASVQWDIDKSLGILDWMGEGLSDEDMKRFNDHYKSSES
Ga0208243_1000461	Ga0208243_100046111	F069970	MTNTIQIGSKVTFDNDKIELFKSETSSADKEVQQYQKIVLGGINQVGIVKELGFALTTVAYPDGWEVPVPTKYLVVLPSEE
Ga0208243_1004273	Ga0208243_10042734	F006324	AADFAVGGPTCATCGTSDFNGDGDFGTDADIEAFFACLAGNCCPSCFEGGSDFNADGDFGTDADIESFFRVLGGGAC
Ga0208243_1005027	Ga0208243_10050277	F006324	ACGTSDFNGDGDFGTDQDIEAFFACLAGNCCPTCFPGGSDFNGDGDFGTDADIESFFRVLGGGNC
Ga0208243_1007137	Ga0208243_10071371	F006324	SDFNGDGDFGTDQDIEAFFACLAGVCCPTCFPGGSDFNGDGDFGTDQDIEAFFRVLAGGT
Ga0208243_1007263	Ga0208243_10072633	F012659	MGDTDMALLATMQEIRNWVRAAAYPGVRKLLEEALPEAKLRAAYQMLDGTVSLDQVRVACKMSPNVVGALAQRCIAMGLMELTEDKRRVRLFDLNDFGLLGAGDEGQERATNGRQAKQK
Ga0208243_1007398	Ga0208243_10073981	F006324	PACGTSDFNGDGDFGTDQDIEAFFACLAGNCCAACFEGGSDFNQDGDFGTDQDIESFFRVLGGGPC
Ga0208243_1008758	Ga0208243_10087584	F006324	AFFACLAGNCCATCFGSDFNNDGDFGTDQDIEAFFRVLAGQPC
Ga0208243_1012326	Ga0208243_10123264	F006324	PPIIALRMVAAPPSGCGTSDFNGDGDFGTDQDIEAFFACLAGSCCATCFEGGSDFNGDGDFGTDQDIESFFRVLGGGDC
Ga0208243_1013786	Ga0208243_10137861	F006324	ACLGGNCCAACFCQGSDFNGDGDFGTDQDIEAFFRVLGGGNC
Ga0208243_1014405	Ga0208243_10144051	F006324	LLFTVETGNPCPGNGCGSSDFNGDGDFGTDGDIEAFFSCLGGTCCATCFCQGSDFNGDGDFGTDQDIESFFRVLAGGQC
Ga0208243_1021490	Ga0208243_10214901	F006324	ADIESFFACLGGSCPPQPCPSSSDFNADGDFGTDADIEAFFRVLAGGEC
Ga0208243_1026697	Ga0208243_10266971	F006324	AVQLGYSSVYQWTPANSDFNGDGDFGTDADIEAFFACLAGNCCPACFPGGADFNSDGDTGTDADIESFFRVLAGGNC
Ga0208243_1031464	Ga0208243_10314642	F006324	ITSTLLTTVRTCGSSDYNGDGDFGTDQDIEAFFACLGGQCCQNCWSGGSDFNGDGDSGTDQDIEAFFRVLSGSGC

Scaffold ID

Protein ID

Family

Sequence

Ga0208243_1000040

Ga0208243_100004047

F009686

MNERQMFERSFQRPSNYFKLPASVQWDIDKSLGILDWMGEGLSDEDMKRFNDHYKSSES

Ga0208243_1000461

Ga0208243_100046111

F069970

MTNTIQIGSKVTFDNDKIELFKSETSSADKEVQQYQKIVLGGINQVGIVKELGFALTTVAYPDGWEVPVPTKYLVVLPSEE

Ga0208243_1004273

Ga0208243_10042734

F006324

AADFAVGGPTCATCGTSDFNGDGDFGTDADIEAFFACLAGNCCPSCFEGGSDFNADGDFGTDADIESFFRVLGGGAC

Ga0208243_1005027

Ga0208243_10050277

F006324

ACGTSDFNGDGDFGTDQDIEAFFACLAGNCCPTCFPGGSDFNGDGDFGTDADIESFFRVLGGGNC

Ga0208243_1007137

Ga0208243_10071371

F006324

SDFNGDGDFGTDQDIEAFFACLAGVCCPTCFPGGSDFNGDGDFGTDQDIEAFFRVLAGGT

Ga0208243_1007263

Ga0208243_10072633

F012659

MGDTDMALLATMQEIRNWVRAAAYPGVRKLLEEALPEAKLRAAYQMLDGTVSLDQVRVACKMSPNVVGALAQRCIAMGLMELTEDKRRVRLFDLNDFGLLGAGDEGQERATNGRQAKQK

Ga0208243_1007398

Ga0208243_10073981

F006324

PACGTSDFNGDGDFGTDQDIEAFFACLAGNCCAACFEGGSDFNQDGDFGTDQDIESFFRVLGGGPC

Ga0208243_1008758

Ga0208243_10087584

F006324

AFFACLAGNCCATCFGSDFNNDGDFGTDQDIEAFFRVLAGQPC

Ga0208243_1012326

Ga0208243_10123264

F006324

PPIIALRMVAAPPSGCGTSDFNGDGDFGTDQDIEAFFACLAGSCCATCFEGGSDFNGDGDFGTDQDIESFFRVLGGGDC

Ga0208243_1013786

Ga0208243_10137861

F006324

ACLGGNCCAACFCQGSDFNGDGDFGTDQDIEAFFRVLGGGNC

Ga0208243_1014405

Ga0208243_10144051

F006324

LLFTVETGNPCPGNGCGSSDFNGDGDFGTDGDIEAFFSCLGGTCCATCFCQGSDFNGDGDFGTDQDIESFFRVLAGGQC

Ga0208243_1021490

Ga0208243_10214901

F006324

ADIESFFACLGGSCPPQPCPSSSDFNADGDFGTDADIEAFFRVLAGGEC

Ga0208243_1026697

Ga0208243_10266971

F006324

AVQLGYSSVYQWTPANSDFNGDGDFGTDADIEAFFACLAGNCCPACFPGGADFNSDGDTGTDADIESFFRVLAGGNC

Ga0208243_1031464

Ga0208243_10314642

F006324

ITSTLLTTVRTCGSSDYNGDGDFGTDQDIEAFFACLGGQCCQNCWSGGSDFNGDGDSGTDQDIEAFFRVLSGSGC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025520: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_QV12A (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences