3300025519: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-2-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025519
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088362 | Ga0207789
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-2-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 137556296
• Sequencing Scaffolds: 28
• Novel Protein Genes: 36
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	27
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus lobata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010514	Metagenome	302	Y
F031319	Metagenome	182	Y
F038929	Metagenome / Metatranscriptome	164	Y
F081965	Metagenome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207789_1005581	Not Available	1966
Ga0207789_1008223	Not Available	1566
Ga0207789_1009470	Not Available	1441
Ga0207789_1017093	Not Available	1026
Ga0207789_1018582	Not Available	978
Ga0207789_1019041	Not Available	964
Ga0207789_1022146	Not Available	885
Ga0207789_1023749	Not Available	850
Ga0207789_1026704	Not Available	796
Ga0207789_1030747	Not Available	732
Ga0207789_1031281	Not Available	725
Ga0207789_1031630	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus lobata	721
Ga0207789_1031990	Not Available	716
Ga0207789_1032450	Not Available	710
Ga0207789_1032537	Not Available	709
Ga0207789_1034974	Not Available	680
Ga0207789_1042095	Not Available	613
Ga0207789_1045475	Not Available	586
Ga0207789_1047192	Not Available	574
Ga0207789_1047481	Not Available	572
Ga0207789_1048212	Not Available	567
Ga0207789_1049901	Not Available	556
Ga0207789_1051246	Not Available	548
Ga0207789_1052252	Not Available	542
Ga0207789_1052776	Not Available	539
Ga0207789_1054882	Not Available	527
Ga0207789_1056510	Not Available	519
Ga0207789_1057307	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207789_1005581	Ga0207789_10055811	F038929	MKQVRIGRKIEKKKIFIPIRSNPTRVKKFKNKCKKILKIKKYHPGFISRRNGSGQAAK
Ga0207789_1008223	Ga0207789_10082231	F010514	PKQDEIGQKRENKILVPNSVLTRSGQENSEKNCKKIQKIIKPLPGIIFSQDGMQ
Ga0207789_1009470	Ga0207789_10094701	F010514	ARRSENKILLQNSVHTRHGQENSEKNSKKIQKIVKPLPGIIFSQYGMR
Ga0207789_1016916	Ga0207789_10169161	F010514	HKILLQNHVNTRPGQENFEKNSKKIQIIIKPLPGIFF
Ga0207789_1017093	Ga0207789_10170931	F010514	VHTRPERENSEKNSKKIQKIIKPLPGIIFSQNGMR
Ga0207789_1018582	Ga0207789_10185822	F038929	MKRIRIGRKVEKKKIFIPIRLNRSRVTKFKNEGKKILKIKKHHPGFISRRNGSGQAEE
Ga0207789_1019041	Ga0207789_10190412	F038929	KTSSRLHFKTKRVRTGCKIENKNNFIPNRSNLTRVRKLKNKCKKILKIKKHHPGFISI
Ga0207789_1019715	Ga0207789_10197152	F010514	MPKKRKKILVPNSVHTRHGQENSEKNSKKITKIIKPLLGIIFSQNGMRLVEKVKSKF
Ga0207789_1022146	Ga0207789_10221461	F010514	RKRENKILVPNSVHTRPGKKNSEKNSKKIQKIVKPILGIIFSENGMRYAEKEKTKF
Ga0207789_1023749	Ga0207789_10237491	F038929	MKLVRTGRKIENKKNFIPTRLNPSRVTKFKNEGKKILKIKKHHPG
Ga0207789_1023749	Ga0207789_10237492	F038929	MKRVRIGRKIEKKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFISR
Ga0207789_1023749	Ga0207789_10237493	F038929	GRKIENKKNFIPTRLNPSRVTKFKNEGKKILKIKKHHPGFIS
Ga0207789_1026704	Ga0207789_10267041	F010514	LVELGGKSENKILVRNSVHTRTGQENSEKNSKKIQKIIKPIPDIIFTQNGRYRPKE
Ga0207789_1030747	Ga0207789_10307471	F010514	RKSEIKILVPNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSKNGMRYAEKEKTKF
Ga0207789_1031281	Ga0207789_10312812	F038929	MQKNFKNYKTSSRLHLNTKRVRAGGKIENKKNFIPIRSNPTRVRKFKNECKKILKIKKHHPGFLSR
Ga0207789_1031630	Ga0207789_10316302	F031319	RPLGSLLTLSMREGETLKNYLDRYWEMFNKIEGKNDAVAITTFKAGLLTDHDLRKSLTGKPVTSVRQLMDRINKYRRV
Ga0207789_1031990	Ga0207789_10319901	F038929	MKQVRIGRKIEKKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFISRRNGSGQAEK
Ga0207789_1031990	Ga0207789_10319902	F038929	RTGRKIENKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFISRRNGSGQAEK
Ga0207789_1032450	Ga0207789_10324501	F038929	RKIENKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFISR
Ga0207789_1032537	Ga0207789_10325372	F010514	GKESKKILVPNSIHTRPGQENSEKNRKNIQKIKKPLCGIIFRQNGM
Ga0207789_1034974	Ga0207789_10349741	F010514	RESEKKILVPNSVLTRPGQENSEKYSKKIQKPISSIIFSQNGMR
Ga0207789_1040149	Ga0207789_10401491	F010514	LREAEKEKKKKNLVPNSVHTQPEQENSEKNSKKIQIIRKPLSGIIFSQNSMR
Ga0207789_1042095	Ga0207789_10420951	F010514	MGRKNGNKILVPNSVHTRHGQENSEKNSKKIQKIIKPLPDIIFSKN
Ga0207789_1042095	Ga0207789_10420952	F010514	MGRKKEKKNLVPNSVHTRPGQENSEKNSKKMQKIIKPLPGIIFSQNGTR
Ga0207789_1045475	Ga0207789_10454751	F010514	RKRENKILVPNSVHTRPGQENSERNSKKIQKIIKPLLGIIFS
Ga0207789_1047192	Ga0207789_10471921	F010514	LPKQDEIGQKRENKILVSNSVLTRPGQENSEKNSKKIQKIINPLPGIIFSQKGMQ
Ga0207789_1047481	Ga0207789_10474811	F010514	PKKKKKNLVPNSVHTQPGQENSKKYGKKIQKIIKPLFGIIFSKKGMR
Ga0207789_1047481	Ga0207789_10474812	F010514	MRSAKNRVKKILVPNSVHTRPGKENSEKKSKKIQKIIKPLPSIIFSQN
Ga0207789_1048212	Ga0207789_10482121	F010514	VHTRPGHENSKKNTKKIQKIIKPLPDIIFSQKGRR
Ga0207789_1049901	Ga0207789_10499011	F010514	MIGRKRENKISVPNSVHTRHGQENSEKNSKKIPKIIKPLPGFIYSQNGMR
Ga0207789_1051246	Ga0207789_10512461	F038929	VKRVRTGRKIENKKNFIPIRLNPSRVTKLKNEGKKILKIKKHHPGFISRQNGSGQAKK
Ga0207789_1052252	Ga0207789_10522522	F010514	EKEKKKLIIPNSVHTRPGQKNSGKNNKKIQKMIKPLPGVIFTKTG
Ga0207789_1052776	Ga0207789_10527761	F010514	ENKILVLNSVHARPGQENSEKNSKKIQKIIKPLPGIIYSQNEMR
Ga0207789_1054882	Ga0207789_10548822	F038929	KTSSRLHFKTKRVRTGCKIENKNNFIPNRSNLTRVRKLKNKCQKSLKIKKHHPGFISI
Ga0207789_1056510	Ga0207789_10565101	F010514	KNENKILLQNSGHIQIGQENSEKNSKKIQKIIKPLPDIIFRQKGRR
Ga0207789_1057307	Ga0207789_10573071	F081965	CFVPTRRVIENSKKEAKKFKKLKNSVMASFQTKIGWKMQRNRENKNYRFVSFLPDAK