NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300025518

3300025518: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_CSW13A (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025518 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053062 | Gp0055516 | Ga0208242
Sample NameSerpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_CSW13A (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size110452987
Sequencing Scaffolds3
Novel Protein Genes3
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSerpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeplanetary subsurface zonerock
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: California, McLaughlin Reserve
CoordinatesLat. (o)38.8739528Long. (o)-122.4391613Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009686Metagenome / Metatranscriptome314Y
F090615Metagenome / Metatranscriptome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208242_109775Not Available1181Open in IMG/M
Ga0208242_115067Not Available878Open in IMG/M
Ga0208242_133884Not Available517Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208242_109775Ga0208242_1097751F090615RSEKLAQMRALQLAAPEPTDPALITALRVRKGWLRPDSSMVDKAAAEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKAVPQARLLIEESVVEHQASWDPGKVYVERTDADIHEEMVTAIKMANADRLRAARAKASAGS
Ga0208242_115067Ga0208242_1150671F090615MRALQLAAPEPTDPTLIAALRVRKGWLKPDDSIVAKAADEGLTKMGVLLCPPPDPNGKSIPARLFNEIAADYLKAVPQARLLIEEATVEHQAFWNPDQPYVERTDADIQEDLVTAIKQANAVRLRAARAKAAAGS
Ga0208242_133884Ga0208242_1338842F009686RSTILQRPLMNERQMFERSFQRPSNYFKLPASVQWDIDKSLGILDWMGEGLSDEDMKRFNDHYKSSES

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.