NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025492

3300025492: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA -CR12Jun_QV11 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025492 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053062 | Gp0055513 | Ga0208370
Sample NameSerpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA -CR12Jun_QV11 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22355824
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSerpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeplanetary subsurface zonerock
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: California, McLaughlin Reserve
CoordinatesLat. (o)38.8739528Long. (o)-122.4391613Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090615Metagenome / Metatranscriptome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208370_100493All Organisms → cellular organisms → Bacteria → Proteobacteria8885Open in IMG/M
Ga0208370_104200Not Available645Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208370_100493Ga0208370_1004931F090615VAAPVAPVVRAAPVPAPAQKPTPAASGTLTRSEKLAQMRALQLAAPEPTDPALITALRVRKGWLRPDSSMVDKAAAEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKAVPQARLLIEESVVEHQASWDPGKVYVERTDADIHEEMVTAIKMANADRLRAARAKASAGS
Ga0208370_104200Ga0208370_1042001F090615VAAPVAPVVRAAPVPAPAQKPTPAASGTLTRSEKLAQMRALQLAAPEPTDPALIAALRVRKGWLRPDSPIVDKAAAEGLKKLGVLLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEEAASELQAFWDPDKPYVERTDVQLHGNLVTAIKMANADRLRAAEAKAAAGISSWIAIE

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