 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025370 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110170 | Gp0088264 | Ga0208377 |
| Sample Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA4M (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 87637415 |
| Sequencing Scaffolds | 32 |
| Novel Protein Genes | 38 |
| Associated Families | 38 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses | 1 |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 11 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Thermodesulfobacteria → Thermodesulfobacteriales → Thermodesulfobacteriaceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → unclassified Bacteroidaceae → Bacteroidaceae bacterium | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001827 | Metagenome / Metatranscriptome | 629 | Y |
| F003520 | Metagenome / Metatranscriptome | 481 | Y |
| F004124 | Metagenome / Metatranscriptome | 452 | Y |
| F005981 | Metagenome / Metatranscriptome | 384 | Y |
| F008750 | Metagenome / Metatranscriptome | 328 | Y |
| F009320 | Metagenome / Metatranscriptome | 319 | Y |
| F011214 | Metagenome / Metatranscriptome | 293 | Y |
| F012108 | Metagenome / Metatranscriptome | 283 | Y |
| F012668 | Metagenome / Metatranscriptome | 278 | Y |
| F012867 | Metagenome | 276 | Y |
| F014736 | Metagenome | 260 | Y |
| F016635 | Metagenome | 245 | Y |
| F019099 | Metagenome | 231 | Y |
| F021106 | Metagenome | 220 | Y |
| F021938 | Metagenome / Metatranscriptome | 216 | Y |
| F022658 | Metagenome / Metatranscriptome | 213 | Y |
| F023293 | Metagenome | 210 | Y |
| F024742 | Metagenome / Metatranscriptome | 204 | Y |
| F024973 | Metagenome / Metatranscriptome | 203 | Y |
| F025283 | Metagenome / Metatranscriptome | 202 | Y |
| F026251 | Metagenome / Metatranscriptome | 198 | N |
| F027555 | Metagenome | 194 | Y |
| F030734 | Metagenome / Metatranscriptome | 184 | Y |
| F032872 | Metagenome / Metatranscriptome | 179 | Y |
| F035159 | Metagenome | 172 | Y |
| F039953 | Metagenome / Metatranscriptome | 162 | Y |
| F041183 | Metagenome / Metatranscriptome | 160 | Y |
| F044942 | Metagenome | 153 | N |
| F050374 | Metagenome | 145 | N |
| F065526 | Metagenome | 127 | N |
| F070115 | Metagenome | 123 | N |
| F074469 | Metagenome / Metatranscriptome | 119 | Y |
| F074805 | Metagenome / Metatranscriptome | 119 | Y |
| F080028 | Metagenome | 115 | Y |
| F088507 | Metagenome / Metatranscriptome | 109 | Y |
| F089765 | Metagenome | 108 | Y |
| F102435 | Metagenome | 101 | Y |
| F102808 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208377_1000478 | All Organisms → Viruses | 5329 | Open in IMG/M |
| Ga0208377_1001176 | Not Available | 3507 | Open in IMG/M |
| Ga0208377_1002647 | All Organisms → cellular organisms → Bacteria | 2357 | Open in IMG/M |
| Ga0208377_1004821 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1717 | Open in IMG/M |
| Ga0208377_1005728 | All Organisms → Viruses → Predicted Viral | 1558 | Open in IMG/M |
| Ga0208377_1007087 | All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Thermodesulfobacteria → Thermodesulfobacteriales → Thermodesulfobacteriaceae | 1378 | Open in IMG/M |
| Ga0208377_1007860 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1296 | Open in IMG/M |
| Ga0208377_1008193 | All Organisms → Viruses → Predicted Viral | 1264 | Open in IMG/M |
| Ga0208377_1009125 | Not Available | 1188 | Open in IMG/M |
| Ga0208377_1010394 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1095 | Open in IMG/M |
| Ga0208377_1011638 | Not Available | 1022 | Open in IMG/M |
| Ga0208377_1011710 | Not Available | 1018 | Open in IMG/M |
| Ga0208377_1013233 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 946 | Open in IMG/M |
| Ga0208377_1016741 | Not Available | 820 | Open in IMG/M |
| Ga0208377_1017338 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → unclassified Bacteroidaceae → Bacteroidaceae bacterium | 803 | Open in IMG/M |
| Ga0208377_1019460 | All Organisms → cellular organisms → Bacteria | 747 | Open in IMG/M |
| Ga0208377_1020009 | All Organisms → cellular organisms → Bacteria | 735 | Open in IMG/M |
| Ga0208377_1020456 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 726 | Open in IMG/M |
| Ga0208377_1024442 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 655 | Open in IMG/M |
| Ga0208377_1024526 | Not Available | 654 | Open in IMG/M |
| Ga0208377_1025193 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 644 | Open in IMG/M |
| Ga0208377_1025686 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 637 | Open in IMG/M |
| Ga0208377_1026282 | Not Available | 629 | Open in IMG/M |
| Ga0208377_1027436 | Not Available | 614 | Open in IMG/M |
| Ga0208377_1027706 | Not Available | 610 | Open in IMG/M |
| Ga0208377_1030175 | Not Available | 582 | Open in IMG/M |
| Ga0208377_1030662 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 577 | Open in IMG/M |
| Ga0208377_1031402 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 569 | Open in IMG/M |
| Ga0208377_1031852 | Not Available | 565 | Open in IMG/M |
| Ga0208377_1031900 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 564 | Open in IMG/M |
| Ga0208377_1033645 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 547 | Open in IMG/M |
| Ga0208377_1035682 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | 530 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208377_1000478 | Ga0208377_10004781 | F005981 | MANVNKPFGLRPLGNLSATGAQKQYGYLIASGYGTAIYQGDLVVVYDGYIIKYDASTH |
| Ga0208377_1001176 | Ga0208377_10011767 | F030734 | MGRAAKMADDQYQGECQPGAQKQDMGKGGPKQTPRKPGKGPVSSVSPRGVGQARNKPCKM |
| Ga0208377_1002647 | Ga0208377_10026472 | F024973 | MIWTLVLVTGINMNSILVVGYFEGETACQRAAKEWRDLGYKVGCVQSTVKK |
| Ga0208377_1004821 | Ga0208377_10048211 | F008750 | MMRKIGLRELFKEPFRKPSPLEMIAEELAESHLAKLQAETAVEYAQSVVDYNLKRIERLNARMEEYK |
| Ga0208377_1005728 | Ga0208377_10057284 | F012108 | MIKIELSVRESLNMIANGCSLDMFDKIVCSLEVALGVNQRRRVTITAGMSTDNRIKCIKCIREHTGWGLKESKDWTDVIVGRYNESGFWTGGGHTNTMLLKTPEAAEALLRDLTSQGCEGYLA |
| Ga0208377_1007087 | Ga0208377_10070875 | F102435 | WWAATSVDSPFRPAPSHPDRPVLRFVGKIATIAARLGLTALFFCETPTADADEVSISHAAIGADGHPMLRNEVW |
| Ga0208377_1007860 | Ga0208377_10078604 | F024742 | MNNETQRIMEALMLIYGSDLQAATITVLLKDGDTAVRYLSSTFPQKEKQDDTN |
| Ga0208377_1007860 | Ga0208377_10078605 | F088507 | MTNCCNANGECTQGRDCPIRKQRAQEANDAFMNRNNGLEPDLIDDLAASVKGLIALVCVATGVAMIAFAFWGK |
| Ga0208377_1008193 | Ga0208377_10081933 | F022658 | VLVFYESLVTEVSNMNDVDKMNYDFAKDRCDREWIKALELMNFYDLYGNSPNGPTTKLEENWTADVDYFNGDRRFF |
| Ga0208377_1009125 | Ga0208377_10091252 | F089765 | MARRGRKPTGTNLVEHLEGSERAKARLKAILETLSGERSIPEVCEELGIQESMFHRVRSEVLQTALDRLEPRPLGRPPLQPSPHDLLVAELEEKNLGLQSELKAAEVRRELAEQLPRLAKPKSIKPASEPGKKTTARSQNRRRKRLQQNTNHPNP |
| Ga0208377_1010394 | Ga0208377_10103942 | F026251 | MALAMNKIILANATTNTAGAYFSNVSLTAANAGTVIPAGTYLIFPSANVVITANNGSAITTLLANATGGMILSDGVYVFAQSTIAGAGTATALTINGGISANSTYTS |
| Ga0208377_1011638 | Ga0208377_10116382 | F001827 | VLGNAEVNMNDAHDAKTMADGAAVVMGLGGFLGWMTPVVTLIGGILTIVWLGIRIWETDTIQKLVKTDA |
| Ga0208377_1011710 | Ga0208377_10117101 | F039953 | VAVMLANPLKLRGSHRVNNMNPEADLEADGWGNSMIEAYTGNHAGHRASRKRLKVITAP |
| Ga0208377_1013233 | Ga0208377_10132332 | F014736 | MNTPIVPDNVVKMWADPRFQILAEVDRLLTGSKIWAGMEYTYHPIHPDKYKPVAVKVRKALYDLQAEYGVLE |
| Ga0208377_1016741 | Ga0208377_10167411 | F032872 | MTVPNDLREAYTGQKRGPQAGFASGLSNSASKCLAADGDGLGMPEPNTDRAVAGEALEGLPGSKSVARVAAAARNQGDPAGSRRTNYEGQAGRGVQRPEERPEARPGVGFVHSSLRQDASLEAGEGANRLTKHAPATRGRKNDGSTLANLPAGDTPRVSLRSPVREYCPPGSVRGVPGNR |
| Ga0208377_1017338 | Ga0208377_10173381 | F027555 | NYTGLKHHLVASSTPQAPRADAIAAGFVEVPIRACPGGPQWVIELEDRDGSKLTLRLAQTDRAAALALAQGLWRQRS |
| Ga0208377_1019460 | Ga0208377_10194601 | F004124 | RTPNEKARILRTQRRSGLSLLAFAGKHGLCYSSLLRWHSRQDSRAKAVRPADPQADPRFVPVRLEDEGPGEEYVLSWPCGRSLKIPRQFQRDSLRRLLSVLEEVR |
| Ga0208377_1020009 | Ga0208377_10200091 | F080028 | MIDYIYTFFAIFFTDIFYTYYLKAVNEDNAIRASCWSVLVFLVACSAVIEYTTNHMLLIPAAFGAFFGTMVGMKLRKSKE |
| Ga0208377_1020456 | Ga0208377_10204562 | F021106 | MAGWNTITQIRKLEERADGLGMRFTAYKHDDMYGEHVALVPKDKDALPIYSRDAILFAGSLEHADRFMQGVLWAREYDRMAVDRNLDKKRERKEQDERNRILLRTLKDGVMPSLVQT |
| Ga0208377_1024442 | Ga0208377_10244421 | F021938 | LKKQTDEEFFLEWWTPTIGEEAAKASWLDKVAMKTREAPMVLSDIEGHISMADGTWVSSRSKHRENLKRNNCIELGNDVQTKQKVHEFSKKDQEARKRQIAEIAYQKLSYK |
| Ga0208377_1024526 | Ga0208377_10245261 | F012867 | FMYEQQRESITEDWGDEISQPLLSEKLNVPRVSYRIYYSNDNLTRRIFIFRGNCTPVVTEIMLGLGFIFAKDGDTENIPDQLVEV |
| Ga0208377_1024526 | Ga0208377_10245262 | F050374 | MKSMIDYKFIGWNNKDGADKVWGAIYIEDRTNSRPKVLIFWGRRGKKLQTKLDCEGWDLDKLVRSKIEKGYKTIYDYQLDNVYPEFLSDLEKTTMWALLKL |
| Ga0208377_1025193 | Ga0208377_10251931 | F009320 | YLLDRESRNVPIALPHDATLAGRYTLTEQSVREVFEDSYSLNCIPGAILNPPNDQGKVTNHKSYGINIMRMGMERGTFLINESCVQFLDEARNYAIDEHGKFTDPDDHIDSARIGILALIQGHGESVVSRSNNFTFRRLTPLEGKAQRI |
| Ga0208377_1025193 | Ga0208377_10251932 | F025283 | MLDKQNLVVESLESPTGNRGITEQTVHEVYVKMVDYLRLTQSKNTFNRFSDYHYLNIPVS |
| Ga0208377_1025686 | Ga0208377_10256861 | F074469 | LPTSINSVMTAPIVIEYSTVANPISAYPVIKQAALLLLTHLYNNRSNTVDTPIREIPFGVATLLRNYKPLVM |
| Ga0208377_1025686 | Ga0208377_10256862 | F012668 | MAIARFENVDVNRLTFGTDSVGEYTTTISKWFATRARVQDVKNNLEIDAKYRVYQDLVNLVFNYTPNMKEIVDNQNLYSITWRGFDWRISDVFESNDRMNVRLMCYRNDPSTRV |
| Ga0208377_1026282 | Ga0208377_10262822 | F019099 | LIINGKIVPDWDKSKISTAYQKPNQFRVITWDMGRVQGWLLGQTPLARNLIEKVIR |
| Ga0208377_1026282 | Ga0208377_10262823 | F023293 | MKYGILDDEGRVVRWVWHMPPYPHIVYKIKKPKLDLSNVPEALF |
| Ga0208377_1027436 | Ga0208377_10274361 | F074805 | NVVIGFQFERVSMSDVILFGSILAAAAAAIVGFVFYSVYGGSKASLANAQEGQVYNFVYEQPLHGTHERFLAKVIGKQMLTADQIAKLNRKSRYRINDPEFVRTNHLVTCQTADGKVRNFYAERVTKCRKPLLAGALFKSGFSNLF |
| Ga0208377_1027706 | Ga0208377_10277061 | F065526 | EKMDAQFLPALPATILILGQCGSGKSSALWSMMTKGYVTGKTKKKSIFDEALIYIGTLDAKASFDKMPIENKLIMTEFEPVSFDEYQTDLKKHQLERLEKGKPMMNTAIVFDDFAGASLMRKAKVGGAPPIEKLCLTSRHESNCTLFYLTQFYKNTGFTSPAVRANLTTIVLYKMPINEVRKIAEEYAEQYDIDEFVAHYDRA |
| Ga0208377_1027990 | Ga0208377_10279903 | F102808 | MATYDIEALKADLPTAKDLAQFVFDRTGQALDLIGKSKDDQYQVAKNALEGKKIPAEFLTDLNPY |
| Ga0208377_1030175 | Ga0208377_10301751 | F070115 | INIHTISWKNQDDVDTKEIKKWCKKNYGNSGYDDETGSNRWVDNIKHSEIMLTRDEDLTLFLLRWE |
| Ga0208377_1030662 | Ga0208377_10306621 | F041183 | LQLGALELIGAENTSGTWTDGFTTNSVLGLIRLAKQQFKVARMPGSPVIVLDSNGDAQVQGGYTGAQVGSSLNRLLAELTGAAVSGPSSGGSNLSALGNELLSTGKIENVYGCMVMFTTFLQATTRTVVGQASLPVLVGAYFGDSAMFTVMKEGLQIKIGEVPGGLQNWLTGVGYFGAGVGDQRRGGAINIL |
| Ga0208377_1031402 | Ga0208377_10314022 | F044942 | IKTVDWLKELGAVDTDTITNELETQAARKSFANIVSAAPSEITHQALAEVKTPAAVQHLVGMLTAYDWEFVSQAKELRGYAVAKILEDCENPSANIRLKALALLGKVTEIGLFTDKIEVKKAELSDDELDQRIKDKLNKFMDVVDVLSNNDDITDLETNGSIEAHESDPA |
| Ga0208377_1031852 | Ga0208377_10318521 | F016635 | MLYAIFDNFHALLNPIRQDILRGGAENRRFCVFLTLEFEFLTTYEVSRPLHRRKPFIGTF |
| Ga0208377_1031900 | Ga0208377_10319002 | F003520 | MAANIPFQAQGKTYKANVTTSSQTIVITADSPCNQLLVANHQPTGSGGQPVYFNVSSNSSATIAVPANASPQYALVSVPGTVKVYTVPTQFGSNPLYVTFIGEAASECYFTPGEGL |
| Ga0208377_1033645 | Ga0208377_10336451 | F035159 | GGDDAPYTREELKRLKGIQKKLRQAEEKRIAALKADQELRKQTIADLVNPPVAKKQQTKVQSNQEVSVDIPSNLANIDRYIANLVKQQQDLQNAVLIRAAKLRLEQELAVLEAKRQAELDDEEALLALIL |
| Ga0208377_1035682 | Ga0208377_10356821 | F011214 | YKNARVAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADSDTLPDMWFYTHIYDARLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKVAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCD |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |