Sample 3300025350

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300025350

3300025350: Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300025350 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067861 \| Gp0093347 \| Ga0209778
Sample Name	Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	91208616
Sequencing Scaffolds	15
Novel Protein Genes	16
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
Not Available	4
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021443	Metagenome / Metatranscriptome	219	Y
F023604	Metagenome / Metatranscriptome	209	Y
F028182	Metagenome / Metatranscriptome	192	N
F043237	Metagenome / Metatranscriptome	156	Y
F068875	Metagenome / Metatranscriptome	124	N
F075398	Metagenome / Metatranscriptome	119	N
F075803	Metagenome / Metatranscriptome	118	Y
F078762	Metagenome / Metatranscriptome	116	Y
F081384	Metagenome / Metatranscriptome	114	N
F096328	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209778_100043	All Organisms → cellular organisms → Bacteria	129718	Open in IMG/M
Ga0209778_100637	All Organisms → cellular organisms → Bacteria	23703	Open in IMG/M
Ga0209778_101435	All Organisms → cellular organisms → Bacteria	11613	Open in IMG/M
Ga0209778_101616	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae	10111	Open in IMG/M
Ga0209778_102073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7822	Open in IMG/M
Ga0209778_104181	Not Available	3424	Open in IMG/M
Ga0209778_105205	All Organisms → Viruses → Predicted Viral	2625	Open in IMG/M
Ga0209778_105909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	2222	Open in IMG/M
Ga0209778_106655	Not Available	1938	Open in IMG/M
Ga0209778_107230	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
Ga0209778_107970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1559	Open in IMG/M
Ga0209778_108835	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
Ga0209778_110418	All Organisms → Viruses → Predicted Viral	1125	Open in IMG/M
Ga0209778_113917	Not Available	809	Open in IMG/M
Ga0209778_117612	Not Available	619	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209778_100043	Ga0209778_10004347	F028182	MRYNTLVMPKVSISEAARRLDTTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSAVPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP
Ga0209778_100637	Ga0209778_1006378	F075803	MRFRTSASEVPNATLWPFLHNLHKPPLHKKLHFRRIPKKAFAIGGFDTTSPRMTLLRSLLEIFWNQGAALERRSTPSTPKGATFLFVYSYITPHGACRFWFAAHLRLHPVLESRVFIEPSLGEPHPYLICGSTLGTFPILNPEKEPTLPKCSFNSTPPEKNQKGYAYA
Ga0209778_101435	Ga0209778_1014352	F023604	MAMDIPVSKAAVKSRALEKAALKGMRPSAGEEEEKPWQAYAKEKNLCPVKIDYISN
Ga0209778_101616	Ga0209778_1016166	F043237	MELGRTARYIAQLSGRGYKYAVVGKLARYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLASKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLKVVERASSLKYPNHKLYTAKLNEALRNLYQILAYTYNDRERLRAIKRKVKHLFVSALKENYGIEPKRAMLDYKNYVVKFSDFLKKKQRGPLNSSTSCPKKLKL
Ga0209778_102073	Ga0209778_1020733	F081384	MLITPSDFGGDYRLFNANNLDPDTIQAIDQAQAELARDLFPVGHSFITGNLPSAPPNLGLRALGLHNLFVPWVFLRLELGILGAGVKRASDVPGRSRFASGAFFAIARQYRYFLDDWLPYEGYIEGIASSPTVLNIPIIASQILAPGMEIEINSERYSVVASSTGLLTIDPPLPLGTGNVRFRQLSLRVNRKWNYL
Ga0209778_104181	Ga0209778_1041811	F078762	PAPFGRWPPHKKNVYNGKSYKGGIEQGNVLALYEVRGDSLFTKAFYMCSHHRYPLSQLNKKLPSTSDTAKAFNTNTATPPATTE
Ga0209778_105205	Ga0209778_1052053	F096328	VREAAYFWSKEAEKILAPYVQALIGAKEPPTISSPLLASPWDYAFSDDLLVDLKLACKARSYGQISHSTLTDIRKSLESGVMVALFIPPRLYLLSPWDITWDGSLESLYICPSVSVPESVVQQVWSIYNRMTL
Ga0209778_105909	Ga0209778_1059094	F096328	MKYTAYFWSKDAEVILAPFVQVLVGAEKPPTISSPLSAANWDYSFDDLLVDLKLACRAGIYGKISDQTLADIQASLRNGVMVALLVPPRLYLLFPYDLTWDGRLETLWNRPSVLVPKNVLEQVWDVYVKMTS
Ga0209778_106655	Ga0209778_1066551	F021443	MRYLLNDEKLTFTFTSSYVECHNYVYGYYQINEILSFAVLDLVLKIINQQKRKSITLKKRKPIIHLLNYIDILNFNFNSNKFVIAFSLENEYKRPLIFNLCLYRRRYKDFYKDNLKVIELKNLCIIRFERDYATRIQPKNLNLATMLMHILEKERIDMIDGNGIIFYCVFLM
Ga0209778_106655	Ga0209778_1066552	F021443	MKCMLKNEKLIFKFACPYPSYVTCYNDNYYQINEILSFAVIDLAFKIINQQKRKSIILKKRKPIIHLLNYIDILNFNSNKFEITFPLENKYKTLLTLNLFLYRSSHQERYYNDLYKNNLKVIERENLCIIELKYDYASRIQPKNVNLVTMLIHILEKKKIYMDLNGIIFYCVFLM
Ga0209778_107230	Ga0209778_1072304	F023604	MRLHFLAPYLLSLTMAMDIPVPKAAVKSRALEKAALKGMRPLAGVREEKPRQAYANETNFCKVKIDYISN
Ga0209778_107970	Ga0209778_1079701	F068875	LELSPANSTFPDIYRLITPRLDEVTSERPEAITEEIGATTYYVRDAARTITATVGQIPTEWAQRVAELRCQAEVGVFLIDANGTIWGRKVDTQTGVAGAPLPVVPSSVDVRFAFPSYTSVQKHIISFQLPFVLADYEIIPLWNNREVLNYLAPQPVGFRVFEDGGTWVVFLFSKYHSPEGTIVVPIANVVVPSEIEIYDSTGTTLVATGASNLGGGKYSLTSSLTSGTQYILDCTAVSSPPRSQFDWPAIRVPFRA
Ga0209778_108835	Ga0209778_1088351	F075398	MLRRLESGRLTFGVSVGLLGMALMSLGYARVDKAPTFKTDPYPFVENLGQLADPEGRPLRDAYFSFEAPGMRGYVTRWG
Ga0209778_110418	Ga0209778_1104182	F096328	MTEAAYFWSKEAEKILAPYVQHLVGAEEPPEISSPLFAMPWDYSFNGLRVDLKLACKARSYRRISHRTLTDIRKSLESGVMVALFIPPHLYLLYPWGAIWDGSLEFLYTCPSILIPESVVQKVCEIYNRMVL
Ga0209778_113917	Ga0209778_1139171	F043237	MDLEKTARYIAQLSRHGYKYAIIGKLVRYDRELVKRLEYDGFVFYLCRLPSKKEVVSYCLPRTEGAFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFINNCLNAIEKASSLTYPSPKLYTGHVNKLLRQLYGILAYTYNDRERLSAIKRKVKHWVVEALKSQYGLKPKDAMLDYSRYVLKFSDVLRKKKSVFRNL
Ga0209778_117612	Ga0209778_1176121	F021443	MKCLLNSGKLTLIFSDPYLIDYVTCCNYDYNYYQTNGILSFAIMDLVFKIVSQEKVKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFSLKNKYKVQLIYNLYLYRSSHRRRYYEDLYKNNLKVIERENLCIIELDDDYASRIQPKNVNLVTMLTHILENKEIDMIDGNGM

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